(Q30504572)

23 September 2017

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text (English)

1 reference

protein-protein interaction

23 September 2017

0 references

1 reference

3

1 reference

22 June 2017

34

1 reference

22 June 2017

12

0 references

Luisa Castagnoli

11

0 references

Luana Licata

9

0 references

Leonardo Briganti

8

0 references

Charles Elkan

29

Charles Elkan

0 references

Miguel Vazquez

Miguel Vazquez

2

0 references

Livia Perfetto

Livia Perfetto

7

0 references

Fabio Rinaldi

Fabio Rinaldi

15

0 references

Graciela Gonzalez

Graciela Gonzalez

17

0 references

Luis M. Rocha

Luis Rocha

21

0 references

David Salgado

David Salgado

4

0 references

W. John Wilbur

20

W John Wilbur

1 reference

23 September 2017

1

Martin Krallinger

1 reference

23 September 2017

30

Zhiyong Lu

1 reference

23 September 2017

Andrew Chatr-Aryamontri

5

Andrew Chatr-Aryamontri

1 reference

23 September 2017

Rezarta Islamaj Dogan

31

Rezarta Islamaj Dogan

1 reference

23 September 2017

22

Hagit Shatkay

1 reference

23 September 2017

16

Robert Leaman

1 reference

23 September 2017

Andrew Winter

6

1 reference

23 September 2017

Marta Iannuccelli

10

1 reference

23 September 2017

Mike Tyers

13

1 reference

23 September 2017

Gerold Schneider

14

1 reference

23 September 2017

Sergio Matos

18

1 reference

23 September 2017

Sun Kim

19

1 reference

23 September 2017

Ashish V Tendulkar

23

1 reference

23 September 2017

Shashank Agarwal

24

1 reference

23 September 2017

Feifan Liu

25

1 reference

23 September 2017

Xinglong Wang

26

1 reference

23 September 2017

Rafal Rak

27

1 reference

23 September 2017

Keith Noto

28

1 reference

23 September 2017

Charles Elkan

29

1 reference

23 September 2017

Jean-Fred Fontaine

32

1 reference

23 September 2017

Miguel A Andrade-Navarro

33

1 reference

23 September 2017

3 October 2011

1 reference

23 September 2017

1 reference

23 September 2017

12 Suppl 8

1 reference

23 September 2017

S3

1 reference

Creative Commons Attribution 2.0 Generic

23 September 2017

start time

3 October 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-12-s8-s3

0 references

cites work

A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

Classifying protein-protein interaction articles using word and syntactic features

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

Identifying relevant data for a biological database: handcrafted rules versus machine learning

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

The BioGRID Interaction Database: 2011 update

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

An Overview of BioCreative II.5.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

Integrating text mining into the MGI biocuration workflow

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

MINT, the molecular interaction database: 2009 update

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

Evaluation of linguistic features useful in extraction of interactions from PubMed; application to annotating known, high-throughput and predicted interactions in I2D

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

The IntAct molecular interaction database in 2010

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

The Ineffectiveness of Within - Document Term Frequency in Text Classification

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

MedlineRanker: flexible ranking of biomedical literature

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

Bayesian inference of protein-protein interactions from biological literature

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

Extract interaction detection methods from the biological literature

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

The Transporter Classification Database: recent advances

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

Introducing meta-services for biomedical information extraction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

Overview of the protein-protein interaction annotation extraction task of BioCreative II

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

OntoGene in BioCreative II

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

Multi-dimensional classification of biomedical text: toward automated, practical provision of high-utility text to diverse users

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

A comparative analysis of retrieval features used in the TREC 2006 Genomics Track passage retrieval task

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

MScanner: a classifier for retrieving Medline citations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

The Gene Ontology project in 2008

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

Automating document classification for the Immune Epitope Database

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

Manual curation is not sufficient for annotation of genomic databases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

An effective general purpose approach for automated biomedical document classification

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

The TREC 2004 genomics track categorization task: classifying full text biomedical documents.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

BioCreAtIvE task 1A: gene mention finding evaluation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

ABNER: an open source tool for automatically tagging genes, proteins and other entity names in text

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

Ranking the whole MEDLINE database according to a large training set using text indexing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

The use of common ontologies and controlled vocabularies to enable data exchange and deposition for complex proteomic experiments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

Protein interaction: same network, different hubs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

PreBIND and Textomy--mining the biomedical literature for protein-protein interactions using a support vector machine

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

The potential use of SUISEKI as a protein interaction discovery tool

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

The FEBS Letters/BioCreative II.5 experiment: making biological information accessible.

20 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-S8-S3

Mining literature for protein-protein interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-S8-S3

Automated extraction of information on protein-protein interactions from the biological literature.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-S8-S3

Creating reference datasets for systems biology applications using text mining.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-S8-S3

OntoGene in BioCreative II.5.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

Classification of protein-protein interaction full-text documents using text and citation network features.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3269938

10.1186/1471-2105-12-S8-S3

26 November 2018

Identifiers

DOI

1 reference

journals/bmcbi/KrallingerVLSCWPBLICCTSRLGMKWRSTALWRNEL11

23 September 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

23 September 2017

1 reference