(Q30540164)

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Mechanism of one-way traffic of hexameric phi29 DNA packaging motor with four electropositive relaying layers facilitating antiparallel revolution

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scholarly article

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Europe PubMed Central

PMC publication ID

28 September 2017

Mechanism of one-way traffic of hexameric phi29 DNA packaging motor with four electropositive relaying layers facilitating antiparallel revolution (English)

1 reference

Europe PubMed Central

PMC publication ID

28 September 2017

author name string

Zhengyi Zhao

1

1 reference

Europe PubMed Central

PMC publication ID

28 September 2017

Emil Khisamutdinov

2

1 reference

Europe PubMed Central

PMC publication ID

28 September 2017

Chad Schwartz

3

1 reference

Europe PubMed Central

PMC publication ID

28 September 2017

Peixuan Guo

4

1 reference

Europe PubMed Central

PMC publication ID

28 September 2017

language of work or name

0 references

publication date

26 March 2013

1 reference

Europe PubMed Central

PMC publication ID

28 September 2017

number of pages

11

1 reference

based on heuristic

inferred from page(s)

1 reference

Europe PubMed Central

PMC publication ID

28 September 2017

7

1 reference

Europe PubMed Central

PMC publication ID

28 September 2017

5

1 reference

Europe PubMed Central

PMC publication ID

28 September 2017

4082-4092

1 reference

Europe PubMed Central

PMC publication ID

28 September 2017

Crystal structure of 3WJ core revealing divalent ion-promoted thermostability and assembly of the Phi29 hexameric motor pRNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Revolution rather than rotation of AAA+ hexameric phi29 nanomotor for viral dsDNA packaging without coiling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

The ATPase of the phi29 DNA packaging motor is a member of the hexameric AAA+ superfamily

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Fabrication of 14 different RNA nanoparticles for specific tumor targeting without accumulation in normal organs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Channel size conversion of Phi29 DNA-packaging nanomotor for discrimination of single- and double-stranded nucleic acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

"Push through one-way valve" mechanism of viral DNA packaging

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Real-time sensing and discrimination of single chemicals using the channel of phi29 DNA packaging nanomotor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Role of channel lysines and the "push through a one-way valve" mechanism of the viral DNA packaging motor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Sequential action of ATPase, ATP, ADP, Pi and dsDNA in procapsid-free system to enlighten mechanism in viral dsDNA packaging

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Structure and function of the AAA+ protein CbbX, a red-type Rubisco activase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

A hypothesis for bacteriophage DNA packaging motors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Three reversible and controllable discrete steps of channel gating of a viral DNA packaging motor.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Role of φ29 connector channel loops in late-stage DNA packaging.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Structure and assembly of the essential RNA ring component of a viral DNA packaging motor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Activation of XerCD-dif recombination by the FtsK DNA translocase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Structure and mechanism of the hexameric MecA-ClpC molecular machine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Self-Assembly of Heptameric Nanoparticles Derived from Tag-Functionalized Phi29 Connectors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

One-way traffic of a viral motor channel for double-stranded DNA translocation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Robust properties of membrane-embedded connector channel of bacterial virus phi29 DNA packaging motor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Assembly mechanism of the sixty-subunit nanoparticles via interaction of RNA with the reengineered protein connector of phi29 DNA-packaging motor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Translocation of double-stranded DNA through membrane-adapted phi29 motor protein nanopores

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Substrate interactions and promiscuity in a viral DNA packaging motor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Engineering of the fluorescent-energy-conversion arm of phi29 DNA packaging motor for single-molecule studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Adjustable ellipsoid nanoparticles assembled from re-engineered connectors of the bacteriophage phi29 DNA packaging motor.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Bright-field analysis of phi29 DNA packaging motor using a magnetomechanical system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Fabrication of massive sheets of single layer patterned arrays using lipid directed reengineered phi29 motor dodecamer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Intersubunit coordination in a homomeric ring ATPase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Novel mechanism of hexamer ring assembly in protein/RNA interactions revealed by single molecule imaging

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Strand and nucleotide-dependent ATPase activity of gp16 of bacterial virus phi29 DNA packaging motor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

The bacteriophage DNA packaging motor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Modulation of the packaging reaction of bacteriophage t4 terminase by DNA structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Structural basis of mechanochemical coupling in a hexameric molecular motor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Viral DNA packaging studied by fluorescence correlation spectroscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Viral nanomotors for packaging of dsDNA and dsRNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Experimental test of connector rotation during DNA packaging into bacteriophage phi29 capsids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Counting of six pRNAs of phi29 DNA-packaging motor with customized single-molecule dual-view system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Evolutionary history and higher order classification of AAA+ ATPases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Detailed architecture of a DNA translocating machine: the high-resolution structure of the bacteriophage phi29 connector particle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Purification and functional characterization of p16, the ATPase of the bacteriophage Phi29 packaging machinery.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Cryoelectron-microscopy image reconstruction of symmetry mismatches in bacteriophage phi29

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Structure and mechanism of the RuvB Holliday junction branch migration motor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Crystal structure of the hexameric replicative helicase RepA of plasmid RSF1010

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Inter-RNA interaction of phage phi29 pRNA to form a hexameric complex for viral DNA transportation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Rotary DNA motors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

A highly sensitive system for the in vitro assembly of bacteriophage phi 29 of Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Bacteriophage T7 helicase/primase proteins form rings around single-stranded DNA that suggest a general structure for hexameric helicases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

In vitro assembly of infectious virions of double-stranded DNA phage phi 29 from cloned gene products and synthetic nucleic acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

A defined system for in vitro packaging of DNA-gp3 of the Bacillus subtilis bacteriophage phi 29.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

A small viral RNA is required for in vitro packaging of bacteriophage phi 29 DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

RNA dependence of the bacteriophage φ29 DNA packaging ATPase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Symmetry mismatch and DNA packaging in large bacteriophages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

20 June 2018

Mechanochemistry of a viral DNA packaging motor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

26 November 2018

Defining molecular and domain boundaries in the bacteriophage phi29 DNA packaging motor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

26 November 2018

Assembly of bacteriophage lambda terminase into a viral DNA maturation and packaging machine.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

26 November 2018

Classification of AAA+ proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

26 November 2018

Portal fusion protein constraints on function in DNA packaging of bacteriophage T4.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

26 November 2018

Virus DNA translocation: progress towards a first ascent of mount pretty difficult

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

26 November 2018

Interaction of gp16 with pRNA and DNA for genome packaging by the motor of bacterial virus phi29.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

26 November 2018

Rebuilt AAA + motors reveal operating principles for ATP-fuelled machines

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

26 November 2018

Mechanism of force generation of a viral DNA packaging motor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

26 November 2018

Construction and 3-D computer modeling of connector arrays with tetragonal to decagonal transition induced by pRNA of phi29 DNA-packaging motor.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

26 November 2018

Translocation of nicked but not gapped DNA by the packaging motor of bacteriophage phi29.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

26 November 2018

The portal protein plays essential roles at different steps of the SPP1 DNA packaging process

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

26 November 2018

EM single particle analysis of the ATP-dependent BchI complex of magnesium chelatase: an AAA+ hexamer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

26 November 2018

Use of acetone to attain highly active and soluble DNA packaging protein Gp16 of Phi29 for ATPase assay

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

26 November 2018

Use of PEG to acquire highly soluble DNA-packaging enzyme gp16 of bacterial virus phi29 for stoichiometry quantification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

26 November 2018

Topology of the components of the DNA packaging machinery in the phage phi29 prohead.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

26 November 2018

Bacteriophage DNA packaging: RNA gears in a DNA transport machine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

26 November 2018

Structure of a multisubunit complex that promotes DNA branch migration.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

26 November 2018

Computer graphic display method for visualizing three-dimensional biological structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3667633

26 November 2018

DNA packaging ATPase of bacteriophage T3

1 reference

https://pubmed.ncbi.nlm.nih.gov/23510192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Three-dimensional reconstruction of the connector of bacteriophage phi 29 at 1.8 nm resolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/23510192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Prohead and DNA-gp3-dependent ATPase activity of the DNA packaging protein gp16 of bacteriophage phi 29

1 reference

https://pubmed.ncbi.nlm.nih.gov/23510192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Function of hexameric RNA in packaging of bacteriophage phi 29 DNA in vitro

1 reference

https://pubmed.ncbi.nlm.nih.gov/23510192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Kinetic and mutational dissection of the two ATPase activities of terminase, the DNA packaging enzyme of bacteriophage Chi

1 reference

https://pubmed.ncbi.nlm.nih.gov/23510192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Initiation events in in-vitro packaging of bacteriophage phi 29 DNA-gp3

1 reference

https://pubmed.ncbi.nlm.nih.gov/23510192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ATP-dependent assembly of double hexamers of SV40 T antigen at the viral origin of DNA replication

1 reference

https://pubmed.ncbi.nlm.nih.gov/23510192

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1021/NN4002775

1 reference

Europe PubMed Central

PMC publication ID

28 September 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

28 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

28 September 2017

ResearchGate publication ID

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