(Q35261260)

7 August 2017

title

A hypothesis for bacteriophage DNA packaging motors (English)

1 reference

7 August 2017

1 reference

Philip Serwer

1

1 reference

7 August 2017

publication date

26 August 2010

1 reference

7 August 2017

1 reference

7 August 2017

volume

2

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7 August 2017

issue

9

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7 August 2017

page(s)

1821-1843

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Creative Commons Attribution 4.0 International

7 August 2017

copyright license

start time

26 August 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Construction of bacteriophage phi29 DNA packaging motor and its applications in nanotechnology and therapy

12 July 2018

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12 July 2018

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12 July 2018

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Modulation of the packaging reaction of bacteriophage t4 terminase by DNA structure

12 July 2018

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Packaging double-helical DNA into viral capsids: structures, forces, and energetics

12 July 2018

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12 July 2018

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Single phage T4 DNA packaging motors exhibit large force generation, high velocity, and dynamic variability.

12 July 2018

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Measurements of single DNA molecule packaging dynamics in bacteriophage lambda reveal high forces, high motor processivity, and capsid transformations.

12 July 2018

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12 July 2018

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Packaging of DNA by bacteriophage epsilon15: structure, forces, and thermodynamics

12 July 2018

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Multiple molecular mechanisms for multidrug resistance transporters

12 July 2018

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12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

DNA packaging and delivery machines in tailed bacteriophages

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Structural framework for DNA translocation via the viral portal protein

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Experimental test of connector rotation during DNA packaging into bacteriophage phi29 capsids

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

A thermally induced phase transition in a viral capsid transforms the hexamers, leaving the pentamers unchanged

12 July 2018

1 reference

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Visualization of the herpes simplex virus portal in situ by cryo-electron tomography

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Structure of epsilon15 bacteriophage reveals genome organization and DNA packaging/injection apparatus

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

The asymmetry in the mature amino-terminus of ClpP facilitates a local symmetry match in ClpAP and ClpXP complexes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

The endonuclease domain of bacteriophage terminases belongs to the resolvase/integrase/ribonuclease H superfamily: a bioinformatics analysis validated by a functional study on bacteriophage T5.

12 July 2018

1 reference

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Common ancestry of herpesviruses and tailed DNA bacteriophages

12 July 2018

1 reference

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Structure of the connector of bacteriophage T7 at 8A resolution: structural homologies of a basic component of a DNA translocating machinery

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

The modern theory of biological evolution: an expanded synthesis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Bacteriophage phi 29 DNA packaging

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Complete nucleotide sequence and likely recombinatorial origin of bacteriophage T3.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Human cytomegalovirus terminase as a target for antiviral chemotherapy

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Detailed architecture of a DNA translocating machine: the high-resolution structure of the bacteriophage phi29 connector particle

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

The bacteriophage straight phi29 portal motor can package DNA against a large internal force

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Cryoelectron-microscopy image reconstruction of symmetry mismatches in bacteriophage phi29

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Herpes simplex virus DNA cleavage and packaging proteins associate with the procapsid prior to its maturation.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Structure of the bacteriophage phi29 DNA packaging motor

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

The terminase enzyme from bacteriophage lambda: a DNA-packaging machine.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Single-event analysis of the packaging of bacteriophage T7 DNA concatemers in vitro

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Mechanism of capsid maturation in a double-stranded DNA virus

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Sequential action of six virus-encoded DNA-packaging RNAs during phage phi29 genomic DNA translocation.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Effects of DNA heterologies on bacteriophage lambda packaging

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Shrinkage of growing Escherichia coli cells by osmotic challenge

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Bacteriophage P22 in vitro DNA packaging monitored by agarose gel electrophoresis: rate of DNA entry into capsids

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Characterization of the bacteriophage T3 DNA packaging reaction in vitro in a defined system.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

The source of energy for bacteriophage DNA packaging: an osmotic pump explains the data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Bacteriophage P22 portal protein is part of the gauge that regulates packing density of intravirion DNA.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Unscrambling the puzzle of biological machines: the importance of the details

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Symmetry mismatch and DNA packaging in large bacteriophages

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Mechanochemistry of a viral DNA packaging motor

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Brownian search-and-catch mechanism for myosin-VI steps

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Packaging of a unit-length viral genome: the role of nucleotides and the gpD decoration protein in stable nucleocapsid assembly in bacteriophage lambda

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Defining molecular and domain boundaries in the bacteriophage phi29 DNA packaging motor

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Thermal fluctuations biased for directional motion in molecular motors.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Fluctuation as a tool of biological molecular machines

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Portal fusion protein constraints on function in DNA packaging of bacteriophage T4.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Mechanism of force generation of a viral DNA packaging motor

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Translocation of nicked but not gapped DNA by the packaging motor of bacteriophage phi29.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Improved isolation of undersampled bacteriophages: finding of distant terminase genes.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Models of bacteriophage DNA packaging motors

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

How many conformations can a protein remember?

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

A dimer as a building block in assembling RNA. A hexamer that gears bacterial virus phi29 DNA-translocating machinery

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

At sixes and sevens: characterization of the symmetry mismatch of the ClpAP chaperone-assisted protease

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

Characterization of ATPase activity of a defined in vitro system for packaging of bacteriophage T3 DNA

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

DNA based molecular motors

24 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185743

A defined in vitro system for DNA packaging by the bacteriophage SPP1: insights into the headful packaging mechanism

24 October 2018

1 reference

12 December 2020

Doubly Stochastic Coherence via Noise-Induced Symmetry in Bistable Neural Models

1 reference

12 December 2020

Structural rearrangements between portal protein subunits are essential for viral DNA translocation

1 reference

12 December 2020

Prohead and DNA-gp3-dependent ATPase activity of the DNA packaging protein gp16 of bacteriophage phi 29

1 reference

12 December 2020

Quantification of the effect of excluded volume on double-stranded DNA

1 reference

12 December 2020

Lever-assisted two-noise stochastic resonance

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12 December 2020

Muscle structure and theories of contraction

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12 December 2020

The bacteriophage phi29 packaging proteins supercoil the DNA ends

1 reference

12 December 2020

Architectural design of spherical viruses

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12 December 2020

In vitro cleavage of the concatemer joint of bacteriophage T3 DNA

1 reference

12 December 2020

Optimization of the in vitro packaging efficiency of bacteriophage T7 DNA: effects of neutral polymers

1 reference

12 December 2020

Modulation of the viral ATPase activity by the portal protein correlates with DNA packaging efficiency

1 reference

12 December 2020

Identifiers

DOI

10.3390/V2091821

1 reference

7 August 2017

1 reference

7 August 2017

1 reference