(Q30543236)

18 August 2017

LASAGNA: a novel algorithm for transcription factor binding site alignment (English)

1 reference

18 August 2017

Chih Lee

1

1 reference

PMC publication ID

3747862

18 August 2017

Chun-Hsi Huang

series ordinal

2

1 reference

18 August 2017

24 March 2013

1 reference

18 August 2017

1 reference

18 August 2017

14

1 reference

18 August 2017

108

1 reference

Creative Commons Attribution 2.0 Generic

18 August 2017

start time

24 March 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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Minimotif Miner: a tool for investigating protein function

28 July 2018

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Exact algorithms for planted motif problems

28 July 2018

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P-Match: transcription factor binding site search by combining patterns and weight matrices

28 July 2018

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MatInspector and beyond: promoter analysis based on transcription factor binding sites

28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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MATCH: A tool for searching transcription factor binding sites in DNA sequences

28 July 2018

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Finding motifs using random projections

28 July 2018

1 reference

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28 July 2018

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Mining for putative regulatory elements in the yeast genome using gene expression data

28 July 2018

1 reference

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Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

28 July 2018

1 reference

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Regulation of the human interleukin-5 promoter by Ets transcription factors. Ets1 and Ets2, but not Elf-1, cooperate with GATA3 and HTLV-I Tax1

28 July 2018

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747862

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747862

Computer methods to locate signals in nucleic acid sequences

28 July 2018

1 reference

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Information content of binding sites on nucleotide sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747862

Comparative analysis of methods for representing and searching for transcription factor binding sites

28 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-108

SiTaR: a novel tool for transcription factor binding site prediction

21 January 2018

1 reference

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SCPD: a promoter database of the yeast Saccharomyces cerevisiae.

21 January 2018

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RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-108

c-Myb and GATA-3 cooperatively regulate IL-13 expression via conserved GATA-3 response element and recruit mixed lineage leukemia (MLL) for histone modification of the IL-13 locus

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-108

The UCSC Genome Browser database: extensions and updates 2011.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747862

Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747862

The PAZAR database of gene regulatory information coupled to the ORCA toolkit for the study of regulatory sequences

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747862

ORegAnno: an open-access community-driven resource for regulatory annotation

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747862

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747862

A role for Ets1, synergizing with AP-1 and GATA-3 in the regulation of IL-5 transcription in mouse Th2 lymphocytes.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747862

Negative information for motif discovery.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747862

26 November 2018

Identifiers

DOI

10.1186/1471-2105-14-108

1 reference

18 August 2017

journals/bmcbi/LeeH13

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

PMC publication ID

3747862

18 August 2017

PubMed publication ID

23522376

1 reference

PMC publication ID

3747862