(Q30551514)

19 August 2017

Phosphate release coupled to rotary motion of F1-ATPase (English)

1 reference

19 August 2017

Kei-ichi Okazaki

1

0 references

Gerhard Hummer

object named as

Gerhard Hummer

series ordinal

2

0 references

language of work or name

English

0 references

publication date

23 September 2013

1 reference

Proceedings of the National Academy of Sciences of the United States of America

19 August 2017

6

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

19 August 2017

110

1 reference

19 August 2017

41

1 reference

19 August 2017

16468-16473

1 reference

The ATP synthase: the understood, the uncertain and the unknown.

19 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Rate of hydrolysis in ATP synthase is fine-tuned by α-subunit motif controlling active site conformation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Twisting and subunit rotation in single F(O)(F1)-ATP synthase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Role of the DELSEED loop in torque transmission of F1-ATPase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Structural evidence of a new catalytic intermediate in the pathway of ATP hydrolysis by F1-ATPase from bovine heart mitochondria

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Single-molecule fluorescence experiments determine protein folding transition path times

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Electrostatic origin of the mechanochemical rotary mechanism and the catalytic dwell of F1-ATPase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Thermodynamic efficiency and mechanochemical coupling of F1-ATPase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Keep It Flexible: Driving Macromolecular Rotary Motions in Atomistic Simulations with GROMACS.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Torsional elasticity and energetics of F1-ATPase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Two rotary motors in F-ATP synthase are elastically coupled by a flexible rotor and a stiff stator stalk

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Mechanism of the conformational change of the F1-ATPase β subunit revealed by free energy simulations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Pi release from myosin: a simulation analysis of possible pathways

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Chemo-mechanical coupling in F(1)-ATPase revealed by catalytic site occupancy during catalysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Torque generation and elastic power transmission in the rotary F(O)F(1)-ATPase.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Correlation between the conformational states of F1-ATPase as determined from its crystal structure and single-molecule rotation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Functional halt positions of rotary FOF1-ATPase correlated with crystal structures.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Determination of alkali and halide monovalent ion parameters for use in explicitly solvated biomolecular simulations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Comparative protein structure modeling using Modeller

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

How subunit coupling produces the gamma-subunit rotary motion in F1-ATPase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Ground state structure of F1-ATPase from bovine heart mitochondria at 1.9 A resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Novel features of the rotary catalytic mechanism revealed in the structure of yeast F1 ATPase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Comparison of multiple Amber force fields and development of improved protein backbone parameters

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Identification of phosphate binding residues of Escherichia coli ATP synthase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Folding-based molecular simulations reveal mechanisms of the rotary motor F1-ATPase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Automatic atom type and bond type perception in molecular mechanical calculations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

A structure-based model for the synthesis and hydrolysis of ATP by F1-ATPase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Scalable molecular dynamics with NAMD

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Molecular dynamics analysis of structural factors influencing back door pi release in myosin

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Asymmetry in the F1-ATPase and its implications for the rotational cycle

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Mechanically driven ATP synthesis by F1-ATPase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Chemomechanical coupling in F1-ATPase revealed by simultaneous observation of nucleotide kinetics and rotation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

On the Mechanism of ATP Hydrolysis in F1-ATPase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Conformational dynamics of the F1-ATPase beta-subunit: a molecular dynamics study

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

The unbinding of ATP from F1-ATPase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

The ATP-waiting conformation of rotating F1-ATPase revealed by single-pair fluorescence resonance energy transfer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Escaping free-energy minima

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Nanoseconds molecular dynamics simulation of primary mechanical energy transfer steps in F1-ATP synthase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Structure of bovine mitochondrial F(1)-ATPase with nucleotide bound to all three catalytic sites: implications for the mechanism of rotary catalysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Resolution of distinct rotational substeps by submillisecond kinetic analysis of F1-ATPase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

The structure of the central stalk in bovine F(1)-ATPase at 2.4 A resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

F1-ATPase is a highly efficient molecular motor that rotates with discrete 120 degree steps

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Direct observation of the rotation of F1-ATPase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

VMD: visual molecular dynamics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Structure at 2.8 A resolution of F1-ATPase from bovine heart mitochondria

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Is myosin a "back door" enzyme?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3799341

Highly coupled ATP synthesis by F1-ATPase single molecules

20 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1305497110

Axle-less F1-ATPase rotates in the correct direction

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1305497110

High-speed atomic force microscopy reveals rotary catalysis of rotorless F₁-ATPase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1305497110

Coupling of rotation and catalysis in F(1)-ATPase revealed by single-molecule imaging and manipulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1305497110

Phosphate release in F1-ATPase catalytic cycle follows ADP release.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1305497110

Mechanical modulation of catalytic power on F1-ATPase

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1305497110

Molecular mechanism of ATP hydrolysis in F1-ATPase revealed by molecular simulations and single-molecule observations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1305497110

Structural fluctuation and concerted motions in F(1)-ATPase: A molecular dynamics study

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1305497110

Structural comparison of F1-ATPase: interplay among enzyme structures, catalysis, and rotations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1305497110

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1305497110

Development of polyphosphate parameters for use with the AMBER force field.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1305497110

PLUMED: A portable plugin for free-energy calculations with molecular dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1305497110

A dynamic analysis of the rotation mechanism for conformational change in F(1)-ATPase

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24062450

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Cooperative three-step motions in catalytic subunits of F(1)-ATPase correlate with 80 degrees and 40 degrees substep rotations

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24062450

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1305497110

1 reference

19 August 2017

0 references

1 reference

PMC publication ID

3799341

19 August 2017

PubMed publication ID

24062450

1 reference

PMC publication ID

3799341