(Q30574135)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10233062%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

title

A solvent model for simulations of peptides in bilayers. I. Membrane-promoting alpha-helix formation (English)

1 reference

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5 December 2019

2

1 reference

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5 December 2019

author name string

Efremov RG

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10233062%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

Vergoten G

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10233062%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

Arseniev AS

series ordinal

4

1 reference

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5 December 2019

language of work or name

English

0 references

publication date

1 May 1999

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10233062%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10233062%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

volume

76

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10233062%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

issue

5

1 reference

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5 December 2019

page(s)

2448-2459

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10233062%20AND%20SRC:MED&resulttype=core&format=json

Improved prediction for the structure of the dimeric transmembrane domain of glycophorin A obtained through global searching

5 December 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

Dynamics of proteins in different solvent systems: analysis of essential motion in lipases

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

Insertion and hairpin formation of membrane proteins: a Monte Carlo study

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

Experimentally determined hydrophobicity scale for proteins at membrane interfaces

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

Free-energy determinants of alpha-helix insertion into lipid bilayers

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

MOLMOL: a program for display and analysis of macromolecular structures

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

Comparison of atomic solvation parametric sets: applicability and limitations in protein folding and binding

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

A Monte Carlo model of fd and Pf1 coat proteins in lipid membranes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

Structural basis of amino acid alpha helix propensity

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

Insertion of peptide chains into lipid membranes: an off-lattice Monte Carlo dynamics model

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

Peptides in membranes: helicity and hydrophobicity

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

Molecular Dynamics Simulations of the Gramicidin Channel

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

Solvation energy in protein folding and binding

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

Accessible surface areas as a measure of the thermodynamic parameters of hydration of peptides

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

The nature of the hydrophobic binding of small peptides at the bilayer interface: implications for the insertion of transbilayer helices

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

Monte Carlo studies of lipid chains and gramicidin A in a model membrane

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

Molecular dynamics simulations of the unfolding of an alpha-helical analogue of ribonuclease A S-peptide in water

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

Extracting hydrophobic free energies from experimental data: relationship to protein folding and theoretical models

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

Modeling of the structure of bacteriorhodopsin. A molecular dynamics study

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

Refined structure of the pore-forming domain of colicin A at 2.4 A resolution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

An energy-based approach to packing the 7-helix bundle of bacteriorhodopsin

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

Atomic solvation parameters applied to molecular dynamics of proteins in solution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

IMPALA: a simple restraint field to simulate the biological membrane in molecular structure studies.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

Direct determination of the membrane affinities of individual amino acids.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

An Efficient Mean Solvation Force Model for Use in Molecular Dynamics Simulations of Proteins in Aqueous Solution

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

Atomic solvation parameters in the analysis of protein-protein docking results

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

Environmental characteristics of residues in proteins: three-dimensional molecular hydrophobicity potential approach.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

Relative helix-forming tendencies of nonpolar amino acids

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

A thermodynamic scale for the helix-forming tendencies of the commonly occurring amino acids

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300217

Improved prediction for the structure of the dimeric transmembrane domain of glycophorin A obtained through global searching

26 November 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977400-X

Folding proteins into membranes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977400-X

The structure of a membrane-spanning polypeptide studied by molecular dynamics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977400-X

Atomic Physicochemical Parameters for Three-Dimensional Structure-Directed Quantitative Structure-Activity Relationships I. Partition Coefficients as a Measure of Hydrophobicity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977400-X

The effect of environment on the stability of an integral membrane helix: Molecular dynamics simulations of surfactant protein C in chloroform, methanol and water

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977400-X

Threshold hydrophobicity dictates helical conformations of peptides in membrane environments

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977400-X

Equation of State Calculations by Fast Computing Machines

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977400-X

Molecular dynamics simulation of the stability of a 22-residue alpha-helix in water and 30% trifluoroethanol

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977400-X

Surface area included in energy refinement of proteins. A comparative study on atomic solvation parameters

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977400-X

Membrane proteins. Membrane protein structure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977400-X

Do helices in membranes prefer to form bundles or stay dispersed in the lipid phase?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977400-X

10.1016/S0006-3495(99)77400-X

7 January 2021

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10233062%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10233062%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

1 reference