(Q30578309)

14 August 2017

The effect of strand bias in Illumina short-read sequencing data (English)

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14 August 2017

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David C Samuels

5

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author name string

Yan Guo

1

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14 August 2017

Jiang Li

2

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14 August 2017

Chung-I Li

3

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14 August 2017

Jirong Long

4

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14 August 2017

Yu Shyr

6

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14 August 2017

language of work or name

English

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publication date

24 November 2012

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14 August 2017

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14 August 2017

13

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14 August 2017

666

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https://scigraph.springernature.com/pub.10.1186/1471-2164-13-666

14 August 2017

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cites work

Exome sequencing generates high quality data in non-target regions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532123

Fast gapped-read alignment with Bowtie 2

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532123

The use of next generation sequencing technology to study the effect of radiation therapy on mitochondrial DNA mutation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532123

VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532123

Exome sequencing as a tool for Mendelian disease gene discovery

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532123

Targeted enrichment beyond the consensus coding DNA sequence exome reveals exons with higher variant densities

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532123

A map of human genome variation from population-scale sequencing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532123

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532123

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532123

The Sequence Alignment/Map format and SAMtools

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532123

Fast and accurate short read alignment with Burrows-Wheeler transform

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532123

Genome-wide association study identifies a new breast cancer susceptibility locus at 6q25.1.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532123

The Shanghai Women's Health Study: rationale, study design, and baseline characteristics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532123

Synonymous and nonsynonymous rate variation in nuclear genes of mammals.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532123

14 July 2018

Identifiers

DOI

10.1186/1471-2164-13-666

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Dimensions Publication ID

14 August 2017

0 references

1 reference

14 August 2017

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