(Q30580501)

21 September 2017

Computational discovery of regulatory elements in a continuous expression space (English)

1 reference

21 September 2017

Mathieu Lajoie

1

1 reference

21 September 2017

Olivier Gascuel

series ordinal

2

1 reference

21 September 2017

Vincent Lefort

series ordinal

3

1 reference

21 September 2017

Laurent Bréhélin

series ordinal

4

1 reference

21 September 2017

27 November 2012

1 reference

21 September 2017

1 reference

21 September 2017

13

1 reference

21 September 2017

11

1 reference

21 September 2017

R109

1 reference

Galvestine-1, a novel chemical probe for the study of the glycerolipid homeostasis system in plant cells.

21 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

ScerTF: a comprehensive database of benchmarked position weight matrices for Saccharomyces species

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

Identification and genome-wide prediction of DNA binding specificities for the ApiAP2 family of regulators from the malaria parasite

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

Identification of RNA recognition elements in the Saccharomyces cerevisiae transcriptome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

Control of gene expression in Plasmodium falciparum - ten years on.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

PlasmoDB: a functional genomic database for malaria parasites

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

Discovering regulatory motifs in the Plasmodium genome using comparative genomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

Specific DNA-binding by apicomplexan AP2 transcription factors

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

Gene regulation by transcription factors and microRNAs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

In silico discovery of transcription regulatory elements in Plasmodium falciparum.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

A universal framework for regulatory element discovery across all genomes and data types

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

Whole-genome analysis of mRNA decay in Plasmodium falciparum reveals a global lengthening of mRNA half-life during the intra-erythrocytic development cycle

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

Improved benchmarks for computational motif discovery

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

Discovering motifs in ranked lists of DNA sequences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

Quantifying similarity between motifs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

Deciphering principles of transcription regulation in eukaryotic genomes.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

Profiling condition-specific, genome-wide regulation of mRNA stability in yeast

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

Discovery of the principal specific transcription factors of Apicomplexa and their implication for the evolution of the AP2-integrase DNA binding domains

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

Revealing the world of RNA interference

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

Genome sequence of the human malaria parasite Plasmodium falciparum

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

Regulatory element detection using correlation with expression.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

Genomic expression programs in the response of yeast cells to environmental changes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

Finding regulatory elements using joint likelihoods for sequence and expression profile data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053739

RankMotif++: a motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors.

20 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FGB-2012-13-11-R109

An algorithm for finding signals of unknown length in DNA sequences

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FGB-2012-13-11-R109

Genes regulated cooperatively by one or more transcription factors and their identification in whole eukaryotic genomes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23186104

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Swimming exercise increases the level of nerve growth factor and stimulates neurogenesis in adult rat hippocampus

1 reference

3 January 2024

https://opencitations.net/index/api/v1/citations/10.1016/J.NEUROSCIENCE.2012.03.030

Identifiers

DOI

10.1186/GB-2012-13-11-R109

1 reference

release_yv7pxtoo7fdyhbsap3l5pmw5im

21 September 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/yv7pxtoo7fdyhbsap3l5pmw5im

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

21 September 2017

PubMed publication ID

23186104

1 reference