(Q30585066)

16 August 2017

MmPalateMiRNA, an R package compendium illustrating analysis of miRNA microarray data (English)

1 reference

inferred from name or label

16 August 2017

1 reference

7 September 2021

Guy N Brock

1

0 references

author name string

Partha Mukhopadhyay

2

1 reference

16 August 2017

Vasyl Pihur

3

1 reference

16 August 2017

Cynthia Webb

4

1 reference

16 August 2017

Robert M Greene

5

1 reference

16 August 2017

M Michele Pisano

6

1 reference

16 August 2017

language of work or name

English

0 references

publication date

8 January 2013

1 reference

Source Code for Biology and Medicine

16 August 2017

1 reference

16 August 2017

8

1 reference

16 August 2017

1

1 reference

16 August 2017

1

1 reference

Creative Commons Attribution 2.0 Generic

16 August 2017

start time

8 January 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

describes a project that uses

1 reference

limma

2 references

22 June 2022

https://europepmc.org/article/PMC/3654997

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Biological impact of missing-value imputation on downstream analyses of gene expression profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

MicroRNAs Regulate Pituitary Development, and MicroRNA 26b Specifically Targets Lymphoid Enhancer Factor 1 (Lef-1), Which Modulates Pituitary Transcription Factor 1 (Pit-1) Expression

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

Developmental microRNA expression profiling of murine embryonic orofacial tissue

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

Toward understanding the informatics and statistical aspects of micro-RNA profiling

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

Consensus miRNA expression profiles derived from interplatform normalization of microarray data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

Lost in translation: an assessment and perspective for computational microRNA target identification

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

MicroRNA-based therapeutics for cancer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

MicroRNAs: target recognition and regulatory functions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

MicroRNAs identified in highly purified liver-derived mitochondria may play a role in apoptosis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

arrayQualityMetrics--a bioconductor package for quality assessment of microarray data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

Quality assessment and data analysis for microRNA expression arrays

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

MicroRNA expression in chicken embryos

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

A comparison of normalization techniques for microRNA microarray data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

Identification of miRNA changes in Alzheimer's disease brain and CSF yields putative biomarkers and insights into disease pathways

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

MicroRNA expression pattern of undifferentiated and differentiated human embryonic stem cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

miRBase: tools for microRNA genomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

Micro-RNA profiling in kidney and bladder cancers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

MicroRNA-34b and MicroRNA-34c are targets of p53 and cooperate in control of cell proliferation and adhesion-independent growth

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

MicroRNA expression dynamics during murine and human erythroid differentiation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

Expression of microRNAs is dynamically regulated during cardiomyocyte hypertrophy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

MicroRNA: past and present.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

Using GOstats to test gene lists for GO term association

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

MicroRNAs and their regulatory roles in animals and plants

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

Reproducible research: a bioinformatics case study

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

Bioconductor: open software development for computational biology and bioinformatics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

Variance stabilization applied to microarray data calibration and to the quantification of differential expression

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

Missing value estimation methods for DNA microarrays

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

Significance analysis of microarrays applied to the ionizing radiation response

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

Gene ontology: tool for the unification of biology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

KEGG: kyoto encyclopedia of genes and genomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

MicroRNA profiling in human medulloblastoma.

20 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1751-0473-8-1

A microarray analysis for differential gene expression in the soybean genome using Bioconductor and R.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1751-0473-8-1

Comparison of normalization methods with microRNA microarray

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1751-0473-8-1

Impact of normalization on miRNA microarray expression profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1751-0473-8-1

A modified LOESS normalization applied to microRNA arrays: a comparative evaluation

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1751-0473-8-1

A personalized microRNA microarray normalization method using a logistic regression model

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1751-0473-8-1

Use of within-array replicate spots for assessing differential expression in microarray experiments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1751-0473-8-1

Phylogenetic Reconstruction Using an Unsupervised Growing Neural Network That Adopts the Topology of a Phylogenetic Tree

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1751-0473-8-1

A compendium to ensure computational reproducibility in high-dimensional classification tasks.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654997

Microarray analysis of miRNA gene expression

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23298515

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1751-0473-8-1

1 reference

journals/scfbm/BrockMPWGP13

16 August 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

16 August 2017

PubMed publication ID

23298515

1 reference