(Q30586686)

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Thermodynamic profiles and nuclear magnetic resonance studies of oligonucleotide duplexes containing single diastereomeric spiroiminodihydantoin lesions

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

Thermodynamic profiles and nuclear magnetic resonance studies of oligonucleotide duplexes containing single diastereomeric spiroiminodihydantoin lesions (English)

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

Dinshaw J. Patel

5

0 references

Vladimir Shafirovich

7

object named as

Vladimir Shafirovich

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

author name string

Irine Khutsishvili

1

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

Na Zhang

2

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

Luis A Marky

3

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

Conor Crean

4

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

Nicholas E Geacintov

6

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Europe PubMed Central

PMC publication ID

15 August 2017

language of work or name

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publication date

13 February 2013

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

52

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

8

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

1354-1363

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

Structural context effects in the oxidation of 8-oxo-7,8-dihydro-2'-deoxyguanosine to hydantoin products: electrostatics, base stacking, and base pairing

1 reference

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20 June 2018

Infection-induced colitis in mice causes dynamic and tissue-specific changes in stress response and DNA damage leading to colon cancer

1 reference

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20 June 2018

DNA repair mechanisms protect our genome from carcinogenesis.

1 reference

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20 June 2018

Characterization of DNA with an 8-oxoguanine modification

1 reference

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20 June 2018

Reactive species and DNA damage in chronic inflammation: reconciling chemical mechanisms and biological fates

1 reference

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20 June 2018

Oxidative stress, inflammation, and cancer: how are they linked?

1 reference

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20 June 2018

Thermodynamic characterization of DNA with 3-deazaadenine and 3-methyl-3-deazaadenine substitutions: the effect of placing a hydrophobic group in the minor groove of DNA.

1 reference

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20 June 2018

Immunity, Inflammation, and Cancer

1 reference

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20 June 2018

Mutation versus repair: NEIL1 removal of hydantoin lesions in single-stranded, bulge, bubble, and duplex DNA contexts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

20 June 2018

Influence of substrate complexity on the diastereoselective formation of spiroiminodihydantoin and guanidinohydantoin from chromate oxidation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

20 June 2018

Absolute configurations of DNA lesions determined by comparisons of experimental ECD and ORD spectra with DFT calculations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

20 June 2018

Absolute configurations of spiroiminodihydantoin and allantoin stereoisomers: comparison of computed and measured electronic circular dichroism spectra

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

20 June 2018

Oxidatively generated damage to the guanine moiety of DNA: mechanistic aspects and formation in cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

20 June 2018

Oxidation of guanine by carbonate radicals derived from photolysis of carbonatotetramminecobalt(III) complexes and the pH dependence of intrastrand DNA cross-links mediated by guanine radical reactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

20 June 2018

Superior removal of hydantoin lesions relative to other oxidized bases by the human DNA glycosylase hNEIL1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

20 June 2018

A study of 7-deaza-2'-deoxyguanosine 2'-deoxycytidine base pairing in DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

20 June 2018

Lesion specificity in the base excision repair enzyme hNeil1: modeling and dynamics studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

20 June 2018

Nei deficient Escherichia coli are sensitive to chromate and accumulate the oxidized guanine lesion spiroiminodihydantoin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

20 June 2018

Incorporation of cationic chains in the Dickerson-Drew dodecamer: correlation of energetics, structure, and ion and water binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

20 June 2018

Recognition of the oxidized lesions spiroiminodihydantoin and guanidinohydantoin in DNA by the mammalian base excision repair glycosylases NEIL1 and NEIL2.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

20 June 2018

Are we sure we know how to measure 8-oxo-7,8-dihydroguanine in DNA from human cells?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

20 June 2018

DNA lesions derived from the site selective oxidation of Guanine by carbonate radical anions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

20 June 2018

DNA oligonucleotide duplexes containing intramolecular platinated cross-links: energetics, hydration, sequence, and ionic effects.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

20 June 2018

Repair of hydantoins, one electron oxidation product of 8-oxoguanine, by DNA glycosylases of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

20 June 2018

Spiroiminodihydantoin is the major product of the 8-oxo-7,8-dihydroguanosine reaction with peroxynitrite in the presence of thiols and guanosine photooxidation by methylene blue.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

20 June 2018

DNA Conformation, Dynamics, and Interactions in Solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

20 June 2018

Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

20 June 2018

Nucleic acids and nuclear magnetic resonance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

20 June 2018

DNA and RNA: NMR studies of conformations and dynamics in solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

20 June 2018

Impact of the oxidized guanine lesion spiroiminodihydantoin on the conformation and thermodynamic stability of a 15-mer DNA duplex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

26 November 2018

One-electron oxidation of DNA and inflammation processes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

26 November 2018

Structural and thermodynamic features of spiroiminodihydantoin damaged DNA duplexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

26 November 2018

Spiroiminodihydantoin lesions derived from guanine oxidation: structures, energetics, and functional implications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

26 November 2018

Effect of the Oxidized Guanosine Lesions Spiroiminodihydantoin and Guanidinohydantoin on Proofreading by Escherichia coli DNA Polymerase I (Klenow Fragment) in Different Sequence Contexts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

26 November 2018

The hydantoin lesions formed from oxidation of 7,8-dihydro-8-oxoguanine are potent sources of replication errors in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

26 November 2018

In vitro nucleotide misinsertion opposite the oxidized guanosine lesions spiroiminodihydantoin and guanidinohydantoin and DNA synthesis past the lesions using Escherichia coli DNA polymerase I (Klenow fragment).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

26 November 2018

Characterization of hydantoin products from one-electron oxidation of 8-oxo-7,8-dihydroguanosine in a nucleoside model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3588586

26 November 2018

Reaction of singlet oxygen with 2'-deoxyguanosine and DNA. Isolation and characterization of the main oxidation products.

1 reference

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26 November 2018

Influence of benzo[a]pyrene diol epoxide chirality on solution conformations of DNA covalent adducts: the (-)-trans-anti-[BP]G.C adduct structure and comparison with the (+)-trans-anti-[BP]G.C enantiomer

1 reference

https://pubmed.ncbi.nlm.nih.gov/23360616

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based on heuristic

inferred from PubMed ID database lookup

Coupling of sequential transitions in a DNA double hairpin: energetics, ion binding, and hydration

1 reference

https://pubmed.ncbi.nlm.nih.gov/23360616

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effects of hydration, ion release, and excluded volume on the melting of triplex and duplex DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/23360616

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based on heuristic

inferred from PubMed ID database lookup

Assignment of absolute configurations of the enantiomeric spiroiminodihydantoin nucleobases by experimental and computational optical rotatory dispersion methods

1 reference

https://pubmed.ncbi.nlm.nih.gov/23360616

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nuclear magnetic resonance studies of the 4R and 4S diastereomers of spiroiminodihydantoin 2'-deoxyribonucleosides: absolute configuration and conformational features

1 reference

https://pubmed.ncbi.nlm.nih.gov/23360616

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Calorimetric unfolding of the bimolecular and i-motif complexes of the human telomere complementary strand, d(C(3)TA(2))(4)

1 reference

https://pubmed.ncbi.nlm.nih.gov/23360616

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Vapor pressure osmometry studies of osmolyte-protein interactions: implications for the action of osmoprotectants in vivo and for the interpretation of "osmotic stress" experiments in vitro

1 reference

https://pubmed.ncbi.nlm.nih.gov/23360616

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based on heuristic

inferred from PubMed ID database lookup

Characterization of spiroiminodihydantoin as a product of one-electron oxidation of 8-Oxo-7,8-dihydroguanosine

1 reference

https://pubmed.ncbi.nlm.nih.gov/23360616

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Removal of hydantoin products of 8-oxoguanine oxidation by the Escherichia coli DNA repair enzyme, FPG

1 reference

https://pubmed.ncbi.nlm.nih.gov/23360616

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based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1021/BI301566V

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

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