(Q30588697)

21 September 2017

SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data (English)

1 reference

21 September 2017

0 references

1 reference

15

1 reference

PubMed publication ID

25 June 2017

Wenlong Jia

1

0 references

Shaoliang Peng

13

object named as

Shaoliang Peng

1 reference

21 September 2017

Kunlong Qiu

2

1 reference

21 September 2017

Minghui He

3

1 reference

21 September 2017

Pengfei Song

4

1 reference

21 September 2017

Quan Zhou

5

1 reference

21 September 2017

Feng Zhou

6

1 reference

21 September 2017

Yuan Yu

7

1 reference

21 September 2017

Dandan Zhu

8

1 reference

21 September 2017

Michael L Nickerson

9

1 reference

21 September 2017

Shengqing Wan

10

1 reference

21 September 2017

Xiangke Liao

11

1 reference

21 September 2017

Xiaoqian Zhu

12

1 reference

21 September 2017

Yingrui Li

14

1 reference

21 September 2017

Guangwu Guo

16

1 reference

21 September 2017

14 February 2013

1 reference

21 September 2017

1 reference

21 September 2017

14

1 reference

21 September 2017

2

1 reference

21 September 2017

R12

1 reference

Differential DNA methylation in discrete developmental stages of the parasitic nematode Trichinella spiralis

21 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

Transforming fusions of FGFR and TACC genes in human glioblastoma

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

ESRRA-C11orf20 is a recurrent gene fusion in serous ovarian carcinoma

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

Genomic sequencing of colorectal adenocarcinomas identifies a recurrent VTI1A-TCF7L2 fusion

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

ChimeraScan: a tool for identifying chimeric transcription in sequencing data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

CREST maps somatic structural variation in cancer genomes with base-pair resolution.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

A novel bioinformatics pipeline for identification and characterization of fusion transcripts in breast cancer and normal cell lines

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

FusionMap: detecting fusion genes from next-generation sequencing data at base-pair resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

FusionHunter: identifying fusion transcripts in cancer using paired-end RNA-seq.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

Identification of fusion genes in breast cancer by paired-end RNA-sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

FusionSeq: a modular framework for finding gene fusions by analyzing Paired-End RNA-Sequencing data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

Survey of the transcriptome of Aspergillus oryzae via massively parallel mRNA sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

Regulatory divergence in Drosophila revealed by mRNA-seq.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

Integrative analysis of the melanoma transcriptome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

Chimeric transcript discovery by paired-end transcriptome sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

SOAP2: an improved ultrafast tool for short read alignment

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

Fast and accurate short read alignment with Burrows-Wheeler transform

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

Massively parallel sequencing of the polyadenylated transcriptome of C. elegans

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

Transcriptome sequencing to detect gene fusions in cancer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

Alternative isoform regulation in human tissue transcriptomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

Mapping short DNA sequencing reads and calling variants using mapping quality scores

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

Chromosomal abnormalities in cancer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

Mapping and quantifying mammalian transcriptomes by RNA-Seq

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

The transcriptional landscape of the yeast genome defined by RNA sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

Distinct classes of chromosomal rearrangements create oncogenic ETS gene fusions in prostate cancer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

The impact of translocations and gene fusions on cancer causation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054009

Fusion genes and rearranged genes as a linear function of chromosome aberrations in cancer

20 June 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23409703

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Detection of bcr-abl fusion in chronic myelogeneous leukemia by in situ hybridization

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23409703

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2013-14-2-R12

1 reference

Dimensions Publication ID

21 September 2017

0 references

1 reference

21 September 2017

PubMed publication ID

23409703

1 reference