(Q30597080)

15 September 2017

An empirical Bayesian framework for somatic mutation detection from cancer genome sequencing data (English)

1 reference

15 September 2017

whole genome sequencing

1 reference

based on heuristic

inferred from title

Cancer genome sequencing

1 reference

Kenichi Yoshida

6

0 references

Yusuke Okuno

object named as

Yusuke Okuno

4

0 references

Satoru Miyano

13

object named as

Satoru Miyano

1 reference

15 September 2017

10

Yukio Homma

1 reference

15 September 2017

9

Haruki Kume

1 reference

15 September 2017

Yuichi Shiraishi

1

1 reference

15 September 2017

Yusuke Sato

2

1 reference

15 September 2017

Kenichi Chiba

3

1 reference

15 September 2017

Yasunobu Nagata

5

1 reference

15 September 2017

Norio Shiba

7

1 reference

15 September 2017

Yasuhide Hayashi

8

1 reference

15 September 2017

Masashi Sanada

11

1 reference

15 September 2017

Seishi Ogawa

12

1 reference

15 September 2017

language of work or name

English

0 references

publication date

6 March 2013

1 reference

15 September 2017

Nucleic Acids Research

1 reference

15 September 2017

41

1 reference

15 September 2017

7

1 reference

15 September 2017

e89

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

15 September 2017

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

A new approach for detecting low-level mutations in next-generation sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627598

The life history of 21 breast cancers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627598

The clonal and mutational evolution spectrum of primary triple-negative breast cancers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627598

VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627598

JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627598

Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627598

SomaticSniper: identification of somatic point mutations in whole genome sequencing data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627598

Frequent pathway mutations of splicing machinery in myelodysplasia

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627598

Sequence-specific error profile of Illumina sequencers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627598

Advances in understanding cancer genomes through second-generation sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627598

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627598

A statistical method for the detection of variants from next-generation resequencing of DNA pools

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627598

Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627598

Fast and accurate short read alignment with Burrows-Wheeler transform

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627598

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627598

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627598

BLAT—The BLAST-Like Alignment Tool

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627598

20 June 2018

Identifiers

DOI

10.1093/NAR/GKT126

1 reference

15 September 2017

1 reference

15 September 2017

PubMed publication ID

23471004

1 reference