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AMBIENT: Active Modules for Bipartite Networks--using high-throughput transcriptomic data to dissect metabolic response
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scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
3656802
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23531303%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
title
AMBIENT: Active Modules for Bipartite Networks--using high-throughput transcriptomic data to dissect metabolic response
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
3656802
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23531303%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
main subject
transcriptome
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author
Michael Sternberg
series ordinal
2
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Europe PubMed Central
PMC publication ID
3656802
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23531303%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
author name string
William A Bryant
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
3656802
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23531303%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
John W Pinney
series ordinal
3
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Europe PubMed Central
PMC publication ID
3656802
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23531303%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
publication date
25 March 2013
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Europe PubMed Central
PMC publication ID
3656802
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23531303%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
published in
BMC Systems Biology
1 reference
stated in
Europe PubMed Central
PMC publication ID
3656802
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23531303%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
volume
7
1 reference
stated in
Europe PubMed Central
PMC publication ID
3656802
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23531303%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
page(s)
26
1 reference
stated in
Europe PubMed Central
PMC publication ID
3656802
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23531303%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
describes a project that uses
Cytoscape
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Cytoscape
2 references
stated in
Europe PubMed Central
retrieved
9 June 2022
reference URL
https://europepmc.org/search?query=(METHODS:'Cytoscape')
based on heuristic
inferred from PubMed Central ID database lookup
stated in
CZ Software Mentions: A large dataset of software mentions in the biomedical literature
exact match
https://scigraph.springernature.com/pub.10.1186/1752-0509-7-26
0 references
cites work
KEGG for integration and interpretation of large-scale molecular data sets
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656802
retrieved
20 June 2018
Cytoscape 2.8: new features for data integration and network visualization
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656802
retrieved
20 June 2018
High-throughput generation, optimization and analysis of genome-scale metabolic models
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656802
retrieved
20 June 2018
PathWave: discovering patterns of differentially regulated enzymes in metabolic pathways
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656802
retrieved
20 June 2018
PathExpress update: the enzyme neighbourhood method of associating gene-expression data with metabolic pathways
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656802
retrieved
20 June 2018
KEGG spider: interpretation of genomics data in the context of the global gene metabolic network
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656802
retrieved
20 June 2018
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656802
retrieved
20 June 2018
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656802
retrieved
20 June 2018
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656802
retrieved
20 June 2018
Inferring meaningful pathways in weighted metabolic networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656802
retrieved
20 June 2018
Graph-based iterative Group Analysis enhances microarray interpretation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656802
retrieved
20 June 2018
PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656802
retrieved
20 June 2018
Discovering regulatory and signalling circuits in molecular interaction networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656802
retrieved
20 June 2018
Exploring the metabolic and genetic control of gene expression on a genomic scale
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3656802
retrieved
20 June 2018
Identifiers
DOI
10.1186/1752-0509-7-26
1 reference
stated in
Europe PubMed Central
PMC publication ID
3656802
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23531303%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
DBLP publication ID
journals/bmcsb/BryantSP13
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
Dimensions Publication ID
1051466576
0 references
PMC publication ID
3656802
1 reference
stated in
Europe PubMed Central
PMC publication ID
3656802
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23531303%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
PubMed publication ID
23531303
1 reference
stated in
Europe PubMed Central
PMC publication ID
3656802
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23531303%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
ResearchGate publication ID
236082921
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