(Q30619219)

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A simple metric of promoter architecture robustly predicts expression breadth of human genes suggesting that most transcription factors are positive regulators

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25079787%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

A simple metric of promoter architecture robustly predicts expression breadth of human genes suggesting that most transcription factors are positive regulators (English)

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25079787%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

Laurence D. Hurst

1

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Europe PubMed Central

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11 March 2020

Alistair Forrest

4

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25079787%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

Lukasz B Huminiecki

5

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Europe PubMed Central

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11 March 2020

author name string

Oxana Sachenkova

2

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Europe PubMed Central

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11 March 2020

Carsten Daub

3

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Europe PubMed Central

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11 March 2020

FANTOM consortium

6

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Europe PubMed Central

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11 March 2020

publication date

31 July 2014

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11 March 2020

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25079787%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

15

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Europe PubMed Central

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11 March 2020

7

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Europe PubMed Central

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11 March 2020

413

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25079787%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

copyright license

Creative Commons Attribution 2.0 Generic

1 July 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

describes a project that uses

object named as

ggplot2

ggplot

2 references

10 June 2022

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=4310617

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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9 September 2019

A promoter-level mammalian expression atlas

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20 June 2018

The panorama of miRNA-mediated mechanisms in mammalian cells

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20 June 2018

Chromatin modifiers and remodellers: regulators of cellular differentiation

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20 June 2018

The functional consequences of intron retention: alternative splicing coupled to NMD as a regulator of gene expression

1 reference

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20 June 2018

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1 reference

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20 June 2018

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1 reference

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20 June 2018

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

1 reference

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20 June 2018

Analysis of variation at transcription factor binding sites in Drosophila and humans

1 reference

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20 June 2018

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1 reference

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20 June 2018

Correcting for the bias due to expression specificity improves the estimation of constrained evolution of expression between mouse and human

1 reference

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20 June 2018

What are the determinants of gene expression levels and breadths in the human genome?

1 reference

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20 June 2018

2R and remodeling of vertebrate signal transduction engine

1 reference

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20 June 2018

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1 reference

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20 June 2018

A problem with the correlation coefficient as a measure of gene expression divergence

1 reference

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20 June 2018

CpG islands--'a rough guide'.

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20 June 2018

How cohesin and CTCF cooperate in regulating gene expression

1 reference

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20 June 2018

Emergence, development and diversification of the TGF-beta signalling pathway within the animal kingdom

1 reference

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20 June 2018

Coding region structural heterogeneity and turnover of transcription start sites contribute to divergence in expression between duplicate genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310617

20 June 2018

Ripples from neighbouring transcription.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310617

20 June 2018

Cohesin and CTCF: cooperating to control chromosome conformation?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310617

20 June 2018

Domain-wide regulation of gene expression in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310617

20 June 2018

Divergence of transcription factor binding sites across related yeast species

1 reference

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20 June 2018

Stochastic mRNA synthesis in mammalian cells

1 reference

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20 June 2018

The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells

1 reference

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20 June 2018

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1 reference

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20 June 2018

Control of gene expression during T cell activation: alternate regulation of mRNA transcription and mRNA stability

1 reference

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20 June 2018

Evolutionary significance of gene expression divergence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310617

20 June 2018

Divergence of spatial gene expression profiles following species-specific gene duplications in human and mouse

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310617

20 June 2018

Chromatin architecture of the human genome: gene-rich domains are enriched in open chromatin fibers

1 reference

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20 June 2018

A gene atlas of the mouse and human protein-encoding transcriptomes

1 reference

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20 June 2018

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

1 reference

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20 June 2018

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1 reference

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20 June 2018

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1 reference

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20 June 2018

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1 reference

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20 June 2018

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1 reference

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20 June 2018

On the relation between promoter divergence and gene expression evolution

1 reference

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25 November 2018

Predicting expression patterns from regulatory sequence in Drosophila segmentation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310617

25 November 2018

Chromatin remodelling is a major source of coexpression of linked genes in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310617

25 November 2018

Deciphering the transcriptional histone acetylation code for a human gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310617

25 November 2018

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1 reference

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25 November 2018

Evolution of cis-regulatory elements in duplicated genes of yeast

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

How much expression divergence after yeast gene duplication could be explained by regulatory motif evolution?

1 reference

https://pubmed.ncbi.nlm.nih.gov/25079787

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Higher duplicability of less important genes in yeast genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/25079787

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An integrated encyclopedia of DNA elements in the human genome

1 reference

4 November 2023

https://opencitations.net/index/coci/api/v1/citations/10.1038/NATURE11247

Identifiers

10.1186/PREACCEPT-7285495961101327

reason for deprecated rank

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

10.1186/S13059-014-0413-3

2 references

https://scigraph.springernature.com/pub.10.1186/s13059-014-0413-3

9 September 2019

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25079787%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

Dimensions Publication ID

1 reference

https://scigraph.springernature.com/pub.10.1186/s13059-014-0413-3

9 September 2019

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25079787%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25079787%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

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