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English
De novo semi-alignment of 16S rRNA gene sequences for deep phylogenetic characterization of next generation sequencing data.
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scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
4070667
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23603801%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
title
De novo semi-alignment of 16S rRNA gene sequences for deep phylogenetic characterization of next generation sequencing data
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
4070667
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23603801%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
main subject
sequence alignment
1 reference
based on heuristic
inferred from title
phylogenetics
1 reference
based on heuristic
inferred from title
author
Ekaterina Avershina
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
4070667
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23603801%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
author name string
Trine Frisli
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
4070667
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23603801%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
Knut Rudi
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
4070667
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23603801%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
publication date
20 April 2013
1 reference
stated in
Europe PubMed Central
PMC publication ID
4070667
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23603801%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
published in
Microbes and environments / JSME
1 reference
stated in
Europe PubMed Central
PMC publication ID
4070667
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23603801%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
volume
28
1 reference
stated in
Europe PubMed Central
PMC publication ID
4070667
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23603801%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
issue
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
4070667
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23603801%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
page(s)
211-216
1 reference
stated in
Europe PubMed Central
PMC publication ID
4070667
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23603801%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
cites work
Bifidobacterial succession and correlation networks in a large unselected cohort of mothers and their children
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PubMed Central
reference URL
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20 June 2018
Estimation of metagenome size and structure in an experimental soil microbiota from low coverage next-generation sequence data
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PubMed Central
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20 June 2018
UCHIME improves sensitivity and speed of chimera detection
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20 June 2018
Multiple sequence alignment: a major challenge to large-scale phylogenetics
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PubMed Central
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20 June 2018
Unveiling an abundant core microbiota in the human adult colon by a phylogroup-independent searching approach
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20 June 2018
The effects of alignment quality, distance calculation method, sequence filtering, and region on the analysis of 16S rRNA gene-based studies
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4070667
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20 June 2018
QIIME allows analysis of high-throughput community sequencing data
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20 June 2018
Real-time DNA sequencing from single polymerase molecules
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4070667
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20 June 2018
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4070667
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20 June 2018
Alignment-independent comparisons of human gastrointestinal tract microbial communities in a multidimensional 16S rRNA gene evolutionary space
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4070667
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20 June 2018
Microbial diversity in the deep sea and the underexplored "rare biosphere"
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20 June 2018
UniFrac: a new phylogenetic method for comparing microbial communities
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20 June 2018
Calibrating bacterial evolution
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20 June 2018
Rates of spontaneous mutation
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20 June 2018
Expanded versions of the 16S and 23S ribosomal RNA mutation databases (16SMDBexp and 23SMDBexp)
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20 June 2018
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4070667
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20 June 2018
The neighbor-joining method: a new method for reconstructing phylogenetic trees
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4070667
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20 June 2018
Alignment-independent bilinear multivariate modelling (AIBIMM) for global analyses of 16S rRNA gene phylogeny
1 reference
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PubMed Central
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retrieved
25 November 2018
Identifiers
DOI
10.1264/JSME2.ME12157
1 reference
stated in
Europe PubMed Central
PMC publication ID
4070667
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23603801%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
PMC publication ID
4070667
1 reference
stated in
Europe PubMed Central
PMC publication ID
4070667
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23603801%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
PubMed publication ID
23603801
1 reference
stated in
Europe PubMed Central
PMC publication ID
4070667
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23603801%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
ResearchGate publication ID
236252451
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