(Q30625699)

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r3Cseq: an R/Bioconductor package for the discovery of long-range genomic interactions from chromosome conformation capture and next-generation sequencing data

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

r3Cseq: an R/Bioconductor package for the discovery of long-range genomic interactions from chromosome conformation capture and next-generation sequencing data (English)

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

1 reference

based on heuristic

inferred from name or label

7 September 2021

5

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Supat Thongjuea

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Supat Thongjuea

1

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Ralph Stadhouders

object named as

Ralph Stadhouders

2

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object named as

Eric Soler

4

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author name string

Frank G Grosveld

3

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

language of work or name

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publication date

13 May 2013

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Europe PubMed Central

PMC publication ID

12 October 2017

Nucleic Acids Research

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Europe PubMed Central

PMC publication ID

12 October 2017

41

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

13

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

e132

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

copyright license

Creative Commons Attribution 3.0 Unported

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

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Multiplexed chromosome conformation capture sequencing for rapid genome-scale high-resolution detection of long-range chromatin interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711450

20 June 2018

Robust 4C-seq data analysis to screen for regulatory DNA interactions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711450

20 June 2018

The long-range interaction landscape of gene promoters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711450

20 June 2018

A decade of 3C technologies: insights into nuclear organization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711450

20 June 2018

Dynamic long-range chromatin interactions control Myb proto-oncogene transcription during erythroid development

1 reference

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20 June 2018

Integrative genomics viewer

1 reference

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20 June 2018

Differential expression analysis for sequence count data

1 reference

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Genome-wide identification of TAL1's functional targets: insights into its mechanisms of action in primary erythroid cells

1 reference

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20 June 2018

A global role for KLF1 in erythropoiesis revealed by ChIP-seq in primary erythroid cells

1 reference

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The genome-wide dynamics of the binding of Ldb1 complexes during erythroid differentiation

1 reference

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Conditional c-myb knockout in adult hematopoietic stem cells leads to loss of self-renewal due to impaired proliferation and accelerated differentiation

1 reference

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

1 reference

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20 June 2018

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

1 reference

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20 June 2018

Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data

1 reference

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20 June 2018

The Sequence Alignment/Map format and SAMtools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711450

20 June 2018

rtracklayer: an R package for interfacing with genome browsers

1 reference

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20 June 2018

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711450

20 June 2018

Modeling ChIP sequencing in silico with applications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711450

20 June 2018

MYB function in normal and cancer cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711450

20 June 2018

A novel 6C assay uncovers Polycomb-mediated higher order chromatin conformations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711450

20 June 2018

High-resolution mapping and characterization of open chromatin across the genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711450

20 June 2018

A positive role for NLI/Ldb1 in long-range beta-globin locus control region function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711450

20 June 2018

Genome-wide mapping of in vivo protein-DNA interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711450

20 June 2018

Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711450

20 June 2018

Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711450

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Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations

1 reference

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20 June 2018

Coordination of erythropoiesis by the transcription factor c-Myb.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711450

20 June 2018

Bioconductor: open software development for computational biology and bioinformatics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711450

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Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

1 reference

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20 June 2018

Progression through key stages of haemopoiesis is dependent on distinct threshold levels of c-Myb.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711450

20 June 2018

Looping and interaction between hypersensitive sites in the active beta-globin locus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711450

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The human genome browser at UCSC

1 reference

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Capturing chromosome conformation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711450

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1 reference

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Determining long-range chromatin interactions for selected genomic sites using 4C-seq technology: from fixation to computation.

1 reference

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25 November 2018

The DNA-Binding Protein CTCF Limits Proximal Vκ Recombination and Restricts κ Enhancer Interactions to the Immunoglobulin κ Light Chain Locus

1 reference

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25 November 2018

The beta-globin nuclear compartment in development and erythroid differentiation

1 reference

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25 November 2018

Expression of myb, myc and fos proto-oncogenes during the differentiation of a murine myeloid leukaemia

1 reference

https://pubmed.ncbi.nlm.nih.gov/23671339

12 December 2020

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10.1093/NAR/GKT373

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

ResearchGate publication ID

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