(Q30648830)

17 August 2017

kmer-SVM: a web server for identifying predictive regulatory sequence features in genomic data sets (English)

1 reference

17 August 2017

1 reference

Dongwon Lee

2

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author name string

Christopher Fletez-Brant

series ordinal

1

1 reference

17 August 2017

Andrew S McCallion

series ordinal

3

1 reference

17 August 2017

Michael A Beer

series ordinal

4

1 reference

17 August 2017

language of work or name

English

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publication date

14 June 2013

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17 August 2017

Nucleic Acids Research

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17 August 2017

41

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17 August 2017

Web Server issue

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17 August 2017

W544-56

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Creative Commons Attribution 3.0 Unported

17 August 2017

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Integration of ChIP-seq and machine learning reveals enhancers and a predictive regulatory sequence vocabulary in melanocytes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

Architecture of the human regulatory network derived from ENCODE data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

An encyclopedia of mouse DNA elements (Mouse ENCODE).

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

The XXmotif web server for eXhaustive, weight matriX-based motif discovery in nucleotide sequences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

Tumor-specific retargeting of an oncogenic transcription factor chimera results in dysregulation of chromatin and transcription.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

Discriminative prediction of mammalian enhancers from DNA sequence.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

ZINBA integrates local covariates with DNA-seq data to identify broad and narrow regions of enrichment, even within amplified genomic regions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

Chromatin accessibility pre-determines glucocorticoid receptor binding patterns.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

RegAnalyst: a web interface for the analysis of regulatory motifs, networks and pathways.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

ChIP-seq accurately predicts tissue-specific activity of enhancers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

Support vector machines and kernels for computational biology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

UniPROBE: an online database of protein binding microarray data on protein-DNA interactions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

Transcription factor and microRNA motif discovery: the Amadeus platform and a compendium of metazoan target sets

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

Cohesins functionally associate with CTCF on mammalian chromosome arms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

A novel ensemble learning method for de novo computational identification of DNA binding sites

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

Quantifying similarity between motifs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

Dissecting self-renewal in stem cells with RNA interference

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

Statistical significance for genomewide studies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

TRANSFAC: transcriptional regulation, from patterns to profiles

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

Predicting gene expression from sequence.

20 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT519

Galaxy: a web-based genome analysis tool for experimentalists

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT519

A training algorithm for optimal margin classifiers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT519

21 January 2018

Support-vector networks

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT519

Constrained binding site diversity within families of transcription factors enhances pattern discovery bioinformatics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT519

RSAT 2011: regulatory sequence analysis tools.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT519

The spectrum kernel: a string kernel for SVM protein classification.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692045

25 November 2018

Identifiers

DOI

10.1093/NAR/GKT519

1 reference

journals/nar/Fletez-BrantLMB13

17 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

17 August 2017

1 reference