(Q30656641)

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3Omics: a web-based systems biology tool for analysis, integration and visualization of human transcriptomic, proteomic and metabolomic data

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scholarly article

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Europe PubMed Central

PMC publication ID

17 August 2017

3Omics: a web-based systems biology tool for analysis, integration and visualization of human transcriptomic, proteomic and metabolomic data (English)

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

0 references

1 reference

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inferred from title

systems biology

1 reference

based on heuristic

inferred from title

Yufeng J. Tseng

object named as

Yufeng Jane Tseng

3

0 references

author name string

Tien-Chueh Kuo

1

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

Tze-Feng Tian

2

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

publication date

23 July 2013

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

BMC Systems Biology

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

7

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

64

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

describes a project that uses

object named as

Cytoscape

2 references

Europe PubMed Central

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data.

1 reference

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28 July 2018

Integrated metabolome and transcriptome analysis of the NCI60 dataset

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

Entrez Gene: gene-centered information at NCBI

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

MetPA: a web-based metabolomics tool for pathway analysis and visualization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

Visualization of omics data for systems biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

Interaction techniques for selecting and manipulating subgraphs in network visualizations.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

Visualizing post genomics data-sets on customized pathway maps by ProMeTra-aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

PubChem: a public information system for analyzing bioactivities of small molecules

1 reference

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28 July 2018

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

1 reference

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28 July 2018

Genetic networks of liver metabolism revealed by integration of metabolic and transcriptional profiling

1 reference

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28 July 2018

An algorithm for thorough background subtraction from high-resolution LC/MS data: application for detection of glutathione-trapped reactive metabolites.

1 reference

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28 July 2018

Multiple high-throughput analyses monitor the response of E. coli to perturbations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

VANTED: a system for advanced data analysis and visualization in the context of biological networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

Pathguide: a pathway resource list

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

KEGG-based pathway visualization tool for complex omics data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

Systems toxicology: applications of toxicogenomics, transcriptomics, proteomics and metabolomics in toxicology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

Role of SRC-1 in the promotion of prostate cancer cell growth and tumor progression

1 reference

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28 July 2018

KaPPA-view: a web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway maps

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

Systems analysis of transcriptome and proteome in retinoic acid/arsenic trioxide-induced cell differentiation/apoptosis of promyelocytic leukemia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

Computational prediction of human metabolic pathways from the complete human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

PaVESy: Pathway Visualization and Editing System

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

UniProt: the Universal Protein knowledgebase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

Cytoscape: a software environment for integrated models of biomolecular interaction networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

Role of the promyelocytic leukemia body in the dynamic interaction between the androgen receptor and steroid receptor coactivator-1 in living cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

Ligand-independent activation of the androgen receptor by interleukin-6 and the role of steroid receptor coactivator-1 in prostate cancer cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

KEGG: kyoto encyclopedia of genes and genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

Integrated transcriptomics, proteomics, and metabolomics analyses to survey ozone responses in the leaves of rice seedling

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-64

21 January 2018

Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior.

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-64

21 January 2018

Integrated pathway analysis of rat urine metabolic profiles and kidney transcriptomic profiles to elucidate the systems toxicology of model nephrotoxicants

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-64

21 January 2018

Combining tissue transcriptomics and urine metabolomics for breast cancer biomarker identification

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-64

21 January 2018

VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology.

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-64

21 January 2018

Arena3D: visualization of biological networks in 3D.

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-64

21 January 2018

A gene network for navigating the literature

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-64

21 January 2018

Comparative proteomic analysis of all-trans-retinoic acid treatment reveals systematic posttranscriptional control mechanisms in acute promyelocytic leukemia

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-64

21 January 2018

Correlating the transcriptome, proteome, and metabolome in the environmental adaptation of a hyperthermophile.

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-64

21 January 2018

Integrative systems biology visualization with MAYDAY.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

25 November 2018

Cerebral: visualizing multiple experimental conditions on a graph with biological context

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

25 November 2018

Combined transcript and metabolite profiling of Arabidopsis leaves reveals fundamental effects of the thiol-disulfide status on plant metabolism

1 reference

https://pubmed.ncbi.nlm.nih.gov/23875761

12 December 2020

based on heuristic

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journals/bmcsb/KuoTT13

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DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

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release_wcjdlm42unfx3fo5car5baq2pe

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ResearchGate publication ID

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