(Q30664491)

18 October 2017

Novel PRD-like homeodomain transcription factors and retrotransposon elements in early human development (English)

1 reference

single cell transcriptomics

18 October 2017

0 references

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

https://www.nxn.se/single-cell-studies/data.tsv

author

Shintaro Katayama

2

1 reference

18 October 2017

3

1 reference

18 October 2017

11

Sten Linnarsson

1 reference

18 October 2017

12

Outi Hovatta

1 reference

18 October 2017

Elo Madissoon

6

0 references

Marisa Jaconi

object named as

Marisa Jaconi

8

0 references

Juha Kere

1 reference

ORCID Public Data File 2021

author name string

Virpi Töhönen

1

1 reference

18 October 2017

Mona Sheikhi

5

1 reference

18 October 2017

Giuditta Filippini-Cattaneo

7

1 reference

18 October 2017

Anna Johnsson

9

1 reference

18 October 2017

Thomas R Bürglin

10

1 reference

18 October 2017

language of work or name

English

0 references

publication date

11 September 2015

1 reference

18 October 2017

Nature Communications

1 reference

18 October 2017

6

1 reference

18 October 2017

8207

1 reference

Creative Commons Attribution 4.0 International

18 October 2017

start time

11 September 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Integrated genome and transcriptome sequencing of the same cell

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

Gene expression variation in Drosophila melanogaster due to rare transposable element insertion alleles of large effect.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

SAMstrt: statistical test for differential expression in single-cell transcriptome with spike-in normalization

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

DNA-binding specificities of human transcription factors

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

A direct interaction between DCP1 and XRN1 couples mRNA decapping to 5' exonucleolytic degradation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

Zscan4 transiently reactivates early embryonic genes during the generation of induced pluripotent stem cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

Finding consistent patterns: a nonparametric approach for identifying differential expression in RNA-Seq data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

The dynamics of vertebrate homeobox gene evolution: gain and loss of genes in mouse and human lineages

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

Functional genomics of 5- to 8-cell stage human embryos by blastomere single-cell cDNA analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

Dynamic changes in gene expression during human early embryo development: from fundamental aspects to clinical applications

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

RNA-Seq analysis to capture the transcriptome landscape of a single cell

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

The combined use of viral transcriptional and post-transcriptional regulatory elements to improve baculovirus-mediated transient gene expression in human embryonic stem cells.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

Transcriptome profiling of human pre-implantation development

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

Induction of pluripotent stem cells from adult human fibroblasts by defined factors

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

Quantifying similarity between motifs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

Computer-controlled, multilevel, morphometric analysis of blastomere size as biomarker of fragmentation and multinuclearity in human embryos

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

Combining evidence using p-values: application to sequence homology searches

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

Human genome organization: Alu, LINES, and the molecular structure of metaphase chromosome bands

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4569847

Non-invasive imaging of human embryos before embryonic genome activation predicts development to the blastocyst stage

20 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS9207

The unique transcriptome through day 3 of human preimplantation development

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS9207

Evolution of Alu elements toward enhancers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS9207

Homeodomain subtypes and functional diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS9207

MuERV-L is one of the earliest transcribed genes in mouse one-cell embryos

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS9207

Highly multiplexed and strand-specific single-cell RNA 5' end sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS9207

Pvclust: an R package for assessing the uncertainty in hierarchical clustering.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS9207

Quantitative changes in total RNA, total poly(A), and ribosomes in early mouse embryos

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26360614

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NCOMMS9207

1 reference

Dimensions Publication ID

18 October 2017

0 references

0 references

1 reference

18 October 2017

1 reference