(Q30667293)

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Combining multiple structure and sequence alignments to improve sequence detection and alignment: application to the SH2 domains of Janus kinases

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

11 September 2017

Combining multiple structure and sequence alignments to improve sequence detection and alignment: application to the SH2 domains of Janus kinases (English)

1 reference

Europe PubMed Central

PMC publication ID

11 September 2017

sequence alignment

1 reference

based on heuristic

inferred from title

Bissan Al-Lazikani

object named as

B Al-Lazikani

1

0 references

author name string

F B Sheinerman

2

1 reference

Europe PubMed Central

PMC publication ID

11 September 2017

B Honig

3

1 reference

Europe PubMed Central

PMC publication ID

11 September 2017

language of work or name

0 references

publication date

1 December 2001

1 reference

Europe PubMed Central

PMC publication ID

11 September 2017

Proceedings of the National Academy of Sciences of the United States of America

1 reference

Europe PubMed Central

PMC publication ID

11 September 2017

98

1 reference

Europe PubMed Central

PMC publication ID

11 September 2017

26

1 reference

Europe PubMed Central

PMC publication ID

11 September 2017

14796-14801

1 reference

Europe PubMed Central

PMC publication ID

11 September 2017

Generalized comparative modeling (GENECOMP): a combination of sequence comparison, threading, and lattice modeling for protein structure prediction and refinement.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

A dual role for the kinase-like domain of the tyrosine kinase Tyk2 in interferon-alpha signaling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

Enhanced genome annotation using structural profiles in the program 3D-PSSM

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

The Pfam protein families database.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

Structure of the amino-terminal domain of Cbl complexed to its binding site on ZAP-70 kinase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

JPred: a consensus secondary structure prediction server

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

https://api.crossref.org/works/10.1073%2FPNAS.011577898

21 January 2018

SMART: identification and annotation of domains from signalling and extracellular protein sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

SMART, a simple modular architecture research tool: identification of signaling domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

VERIFY3D: assessment of protein models with three-dimensional profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

The amino-terminal region of Tyk2 sustains the level of interferon alpha receptor 1, a component of the interferon alpha/beta receptor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

Modular peptide recognition domains in eukaryotic signaling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

Incorporating protein conformational flexibility into the calculation of pH-dependent protein properties

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

Hidden Markov models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

Using CLUSTAL for multiple sequence alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

Applying motif and profile searches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

Protein fold recognition using sequence-derived predictions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

Molecular characterization of an alpha interferon receptor 1 subunit (IFNaR1) domain required for TYK2 binding and signal transduction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

Comparative protein modelling by satisfaction of spatial restraints

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

PHD--an automatic mail server for protein secondary structure prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

Hidden Markov models in computational biology. Applications to protein modeling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

Transcriptional responses to polypeptide ligands: the JAK-STAT pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

A general method applicable to the search for similarities in the amino acid sequence of two proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

pKa's of ionizable groups in proteins: atomic detail from a continuum electrostatic model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

Assessment of protein models with three-dimensional profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

Amino acid substitution matrices from protein blocks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

Crystal structure of the phosphotyrosine recognition domain SH2 of v-src complexed with tyrosine-phosphorylated peptides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

Point mutations in the abl SH2 domain coordinately impair phosphotyrosine binding in vitro and transforming activity in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

The Protein Data Bank: a computer-based archival file for macromolecular structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64938

20 June 2018

Combination of threading potentials and sequence profiles improves fold recognition.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.011577898

21 January 2018

Large-scale comparison of protein sequence alignment algorithms with structure alignments

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.011577898

21 January 2018

The determinants of pKas in proteins

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.011577898

21 January 2018

Six X-Linked Agammaglobulinemia-Causing Missense Mutations in the Src Homology 2 Domain of Bruton's Tyrosine Kinase: Phosphotyrosine-Binding and Circular Dichroism Analysis

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.011577898

21 January 2018

Jak2 Acts as Both a STAT1 Kinase and as a Molecular Bridge Linking STAT1 to the Angiotensin II AT1Receptor

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.011577898

21 January 2018

An SH2 domain in disguise

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.011577898

21 January 2018

Hidden Markov models that use predicted secondary structures for fold recognition

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.011577898

21 January 2018

Computational and functional analysis of the putative SH2 domain in Janus Kinases

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.011577898

21 January 2018

Calorimetric examination of high-affinity Src SH2 domain-tyrosyl phosphopeptide binding: dissection of the phosphopeptide sequence specificity and coupling energetics

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.011577898

21 January 2018

Do aligned sequences share the same fold?

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.011577898

21 January 2018

DSC: public domain protein secondary structure predication

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.011577898

21 January 2018

On the calculation of pKas in proteins

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.011577898

21 January 2018

JAK2, a third member of the JAK family of protein tyrosine kinases

1 reference

https://pubmed.ncbi.nlm.nih.gov/11752426

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence to structure alignment in comparative modeling using PrISM

1 reference

https://pubmed.ncbi.nlm.nih.gov/11752426

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1073/PNAS.011577898

1 reference

Europe PubMed Central

PMC publication ID

11 September 2017

2001PNAS...9814796A

0 references

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1 reference

https://api.fatcat.wiki/v0/release/7kg5z6dd3zevrmlbkjpl5j2jem

24 November 2022

based on heuristic

mapped directly with Wikidata item

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 September 2017

ResearchGate publication ID

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