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Guide: a desktop application for analysing gene expression data
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instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
3815230
retrieved
19 August 2017
title
Guide: a desktop application for analysing gene expression data
(English)
1 reference
stated in
Europe PubMed Central
PMCID
3815230
retrieved
19 August 2017
author name string
Jarny Choi
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
3815230
retrieved
19 August 2017
language of work or name
English
0 references
publication date
7 October 2013
1 reference
stated in
Europe PubMed Central
PMCID
3815230
retrieved
19 August 2017
published in
BMC Genomics
1 reference
stated in
Europe PubMed Central
PMCID
3815230
retrieved
19 August 2017
volume
14
1 reference
stated in
Europe PubMed Central
PMCID
3815230
retrieved
19 August 2017
page(s)
688
1 reference
stated in
Europe PubMed Central
PMCID
3815230
retrieved
19 August 2017
describes a project that uses
limma
object named as
limma
2 references
stated in
Europe PubMed Central
retrieved
22 June 2022
reference URL
https://europepmc.org/article/PMC/3815230
based on heuristic
inferred from PubMed Central ID database lookup
stated in
CZ Software Mentions: A large dataset of software mentions in the biomedical literature
edgeR
object named as
edgeR
1 reference
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CZ Software Mentions: A large dataset of software mentions in the biomedical literature
exact match
https://scigraph.springernature.com/pub.10.1186/1471-2164-14-688
0 references
cites work
voom: Precision weights unlock linear model analysis tools for RNA-seq read counts
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815230
retrieved
20 June 2018
Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815230
retrieved
20 June 2018
The bench scientist's guide to statistical analysis of RNA-Seq data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815230
retrieved
20 June 2018
Camera: a competitive gene set test accounting for inter-gene correlation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815230
retrieved
20 June 2018
The impact of next-generation sequencing on genomics
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815230
retrieved
20 June 2018
Entrez Gene: gene-centered information at NCBI
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815230
retrieved
20 June 2018
Ensembl 2011
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815230
retrieved
20 June 2018
Optimizing the noise versus bias trade-off for Illumina whole genome expression BeadChips
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815230
retrieved
20 June 2018
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815230
retrieved
20 June 2018
ROAST: rotation gene set tests for complex microarray experiments
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815230
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20 June 2018
geWorkbench: an open source platform for integrative genomics
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815230
retrieved
20 June 2018
Understanding mechanisms underlying human gene expression variation with RNA sequencing
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815230
retrieved
20 June 2018
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815230
retrieved
20 June 2018
TM4 microarray software suite
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815230
retrieved
20 June 2018
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815230
retrieved
20 June 2018
GenePattern 2.0
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815230
retrieved
20 June 2018
The Mouse Genome Database (MGD): from genes to mice--a community resource for mouse biology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815230
retrieved
20 June 2018
Bioconductor: open software development for computational biology and bioinformatics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815230
retrieved
20 June 2018
limmaGUI: a graphical user interface for linear modeling of microarray data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3815230
retrieved
20 June 2018
Identifiers
DOI
10.1186/1471-2164-14-688
1 reference
stated in
Europe PubMed Central
PMCID
3815230
retrieved
19 August 2017
Dimensions Publication ID
1014225438
0 references
PMCID
3815230
1 reference
stated in
Europe PubMed Central
PMCID
3815230
retrieved
19 August 2017
PubMed ID
24093424
1 reference
stated in
Europe PubMed Central
PMCID
3815230
retrieved
19 August 2017
ResearchGate publication ID
257460411
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