(Q30701668)

13 October 2017

Assessing computational methods for transcription factor target gene identification based on ChIP-seq data (English)

1 reference

13 October 2017

Andreas Beyer

5

0 references

author name string

Weronika Sikora-Wohlfeld

1

1 reference

13 October 2017

Marit Ackermann

2

1 reference

13 October 2017

Eleni G Christodoulou

3

1 reference

13 October 2017

Kalaimathy Singaravelu

4

1 reference

13 October 2017

21 November 2013

1 reference

PLOS Computational Biology

13 October 2017

1 reference

13 October 2017

9

1 reference

13 October 2017

11

1 reference

13 October 2017

e1003342

1 reference

Creative Commons Attribution 3.0 Unported

13 October 2017

start time

21 November 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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1 reference

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Systematic evaluation of factors influencing ChIP-seq fidelity

20 June 2018

1 reference

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Construction and analysis of an integrated regulatory network derived from high-throughput sequencing data

20 June 2018

1 reference

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Discovering transcription factor regulatory targets using gene expression and binding data

20 June 2018

1 reference

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TIP: a probabilistic method for identifying transcription factor target genes from ChIP-seq binding profiles

20 June 2018

1 reference

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Evaluation of algorithm performance in ChIP-seq peak detection

20 June 2018

1 reference

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ChIP-PaM: an algorithm to identify protein-DNA interaction using ChIP-Seq data

20 June 2018

1 reference

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ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data

20 June 2018

1 reference

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A quantitative model of transcriptional regulation reveals the influence of binding location on expression

20 June 2018

1 reference

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ChIP-Seq of transcription factors predicts absolute and differential gene expression in embryonic stem cells

20 June 2018

1 reference

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An oestrogen-receptor-α-bound human chromatin interactome

20 June 2018

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Computation for ChIP-seq and RNA-seq studies

20 June 2018

1 reference

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Expression quantitative trait loci are highly sensitive to cellular differentiation state

20 June 2018

1 reference

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ChIP-seq: advantages and challenges of a maturing technology

20 June 2018

1 reference

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Predicting functionality of protein-DNA interactions by integrating diverse evidence

20 June 2018

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Role of the murine reprogramming factors in the induction of pluripotency

20 June 2018

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Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

20 June 2018

1 reference

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Model-based analysis of ChIP-Seq (MACS)

20 June 2018

1 reference

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Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

20 June 2018

1 reference

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Associating transcription factor-binding site motifs with target GO terms and target genes

20 June 2018

1 reference

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Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data

20 June 2018

1 reference

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Prioritization of gene regulatory interactions from large-scale modules in yeast

20 June 2018

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Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements

20 June 2018

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Integrated assessment and prediction of transcription factor binding

20 June 2018

1 reference

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Improved scoring of functional groups from gene expression data by decorrelating GO graph structure

20 June 2018

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TF Target Mapper: a BLAST search tool for the identification of Transcription Factor target genes

20 June 2018

1 reference

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The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837635

Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data

20 June 2018

1 reference

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BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis

20 June 2018

1 reference

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Bioconductor: open software development for computational biology and bioinformatics

20 June 2018

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Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments

20 June 2018

1 reference

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Gene ontology: tool for the unification of biology

20 June 2018

1 reference

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A compendium of genome-wide hematopoietic transcription factor maps supports the identification of gene regulatory control mechanisms

20 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003342

Computational discovery of gene modules and regulatory networks

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003342

10.1371/JOURNAL.PCBI.1003342

21 January 2018

Identifiers

DOI

1 reference

journals/ploscb/Sikora-WohlfeldACKB13

13 October 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

13 October 2017

1 reference