(Q30734499)

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Cross-linking immunoprecipitation-MS (xIP-MS): Topological Analysis of Chromatin-associated Protein Complexes Using Single Affinity Purification

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Europe PubMed Central

16 August 2017

Cross-linking immunoprecipitation-MS (xIP-MS): Topological Analysis of Chromatin-associated Protein Complexes Using Single Affinity Purification (English)

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Europe PubMed Central

16 August 2017

2

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7 June 2020

author name string

Matthew M Makowski

1

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7 June 2020

Pascal W T C Jansen

3

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7 June 2020

Michiel Vermeulen

4

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7 June 2020

publication date

11 November 2015

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16 August 2017

Molecular & Cellular Proteomics

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7 June 2020

15

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7 June 2020

3

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7 June 2020

854-865

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Europe PubMed Central

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7 June 2020

A strategy for dissecting the architectures of native macromolecular assemblies

1 reference

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20 June 2018

Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry.

1 reference

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Serum Albumin Domain Structures in Human Blood Serum by Mass Spectrometry and Computational Biology

1 reference

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Chemical cross-linking and mass spectrometry to determine the subunit interaction network in a recombinant human SAGA HAT subcomplex

1 reference

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1 reference

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Xlink Analyzer: software for analysis and visualization of cross-linking data in the context of three-dimensional structures

1 reference

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20 June 2018

xiNET: cross-link network maps with residue resolution

1 reference

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1 reference

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1 reference

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1 reference

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20 June 2018

Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ.

1 reference

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20 June 2018

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1 reference

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SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information

1 reference

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20 June 2018

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

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20 June 2018

Matching cross-linked peptide spectra: only as good as the worse identification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4813705

20 June 2018

Molecular architecture of the ATP-dependent chromatin-remodeling complex SWR1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4813705

20 June 2018

Structure and subunit topology of the INO80 chromatin remodeler and its nucleosome complex.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4813705

20 June 2018

Quantitative cross-linking/mass spectrometry using isotope-labelled cross-linkers

1 reference

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20 June 2018

An asymmetric SMC-kleisin bridge in prokaryotic condensin

1 reference

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Molecular architecture of human polycomb repressive complex 2

1 reference

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20 June 2018

Stoichiometry of chromatin-associated protein complexes revealed by label-free quantitative mass spectrometry-based proteomics

1 reference

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20 June 2018

A cross-platform toolkit for mass spectrometry and proteomics

1 reference

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20 June 2018

Identification of cross-linked peptides from complex samples.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4813705

20 June 2018

Affinity-purification coupled to mass spectrometry: basic principles and strategies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4813705

20 June 2018

Optimizing the enrichment of cross-linked products for mass spectrometric protein analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4813705

20 June 2018

Expanding the chemical cross-linking toolbox by the use of multiple proteases and enrichment by size exclusion chromatography

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20 June 2018

UCSF Chimera, MODELLER, and IMP: an integrated modeling system

1 reference

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ProDy: protein dynamics inferred from theory and experiments

1 reference

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Quantitative proteomics for epigenetics.

1 reference

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A positively charged channel within the Smc1/Smc3 hinge required for sister chromatid cohesion

1 reference

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The beginning of a beautiful friendship: cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes

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Structural insights into the calmodulin-Munc13 interaction obtained by cross-linking and mass spectrometry

1 reference

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MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4813705

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BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4813705

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4813705

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4813705

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

https://pubmed.ncbi.nlm.nih.gov/26560067

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stepwise Regulated Chromatin Assembly of MCM2–7 Proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/26560067

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1074/MCP.M115.053082

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26560067%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26560067%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26560067%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

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