(Q30757350)

English

Molecular dynamics simulation of the RNA complex of a double-stranded RNA-binding domain reveals dynamic features of the intermolecular interface and its hydration

scientific article

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

Molecular dynamics simulation of the RNA complex of a double-stranded RNA-binding domain reveals dynamic features of the intermolecular interface and its hydration (English)

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

molecular dynamics simulation

0 references

author name string

Tiziana Castrignanò

1

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

Giovanni Chillemi

2

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

Gabriele Varani

3

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

Alessandro Desideri

4

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

language of work or name

0 references

publication date

1 December 2002

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

Biophysical Journal

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

83

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

6

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

3542-3552

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

Structure and hydration of the DNA-human topoisomerase I covalent complex.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

20 June 2018

NMR and molecular dynamics studies of the hydration of a zinc finger-DNA complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

20 June 2018

Structure and hydration of BamHI DNA recognition site: a molecular dynamics investigation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

20 June 2018

RNA recognition by a Staufen double-stranded RNA-binding domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

20 June 2018

Structure, interaction, dynamics and solvent effects on the DNA-EcoRI complex in aqueous solution from molecular dynamics simulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

20 June 2018

Molecular dynamics simulations of the complex between human U1A protein and hairpin II of U1 small nuclear RNA and of free RNA in solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

20 June 2018

Molecular basis of double-stranded RNA-protein interactions: structure of a dsRNA-binding domain complexed with dsRNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

20 June 2018

Molecular dynamics simulations of an oligonucleotide duplex with adenine tracts phased by a full helix turn.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

20 June 2018

RNA recognition by RNP proteins during RNA processing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

20 June 2018

Interaction of human SRY protein with DNA: a molecular dynamics study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

20 June 2018

Minor-groove recognition of double-stranded RNA by the double-stranded RNA-binding domain from the RNA-activated protein kinase PKR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

20 June 2018

Binding properties of newly identified Xenopus proteins containing dsRNA-binding motifs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

20 June 2018

Investigation of protein motions via relaxation measurements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

20 June 2018

The intracellular localization of messenger RNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

20 June 2018

Molecular dynamics simulations of the glucocorticoid receptor DNA-binding domain in complex with DNA and free in solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

20 June 2018

Structure of the dsRNA binding domain of E. coli RNase III.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

20 June 2018

NMR solution structure of a dsRNA binding domain from Drosophila staufen protein reveals homology to the N-terminal domain of ribosomal protein S5

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

20 June 2018

Interactions between the double-stranded RNA binding motif and RNA: definition of the binding site for the interferon-induced protein kinase DAI (PKR) on adenovirus VA RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

20 June 2018

cis-acting sequences responsible for anterior localization of bicoid mRNA in Drosophila embryos

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

20 June 2018

oskar mRNA is localized to the posterior pole of the Drosophila oocyte

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

20 June 2018

staufen, a gene required to localize maternal RNAs in the Drosophila egg

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

20 June 2018

Solution structure of an unusually stable RNA hairpin, 5GGAC(UUCG)GUCC

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

20 June 2018

NMR observation of individual molecules of hydration water bound to DNA duplexes: direct evidence for a spine of hydration water present in aqueous solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

20 June 2018

A conserved double-stranded RNA-binding domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

20 June 2018

Molecular dynamics studies of U1A-RNA complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

25 November 2018

Staufen-dependent localization of prospero mRNA contributes to neuroblast daughter-cell fate.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

25 November 2018

Multiple RNA regulatory elements mediate distinct steps in localization of oskar mRNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

25 November 2018

Staufen protein associates with the 3'UTR of bicoid mRNA to form particles that move in a microtubule-dependent manner.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302429

25 November 2018

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975354-X

7 January 2021

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975354-X

7 January 2021

Simulations of the dynamics at an RNA-protein interface

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975354-X

7 January 2021

Comparison of simple potential functions for simulating liquid water

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975354-X

7 January 2021

Changes in side-chain and backbone dynamics identify determinants of specificity in RNA recognition by human U1A protein

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975354-X

7 January 2021

Protein hydration in aqueous solution

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975354-X

7 January 2021

Mapping of the spectral densities of N-H bond motions in eglin c using heteronuclear relaxation experiments

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975354-X

7 January 2021

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975354-X

7 January 2021

Two RNA-binding motifs in the double-stranded RNA-activated protein kinase, DAI

1 reference

https://pubmed.ncbi.nlm.nih.gov/12496121

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/S0006-3495(02)75354-X

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

release_4zemw2qai5cv7ejd2tm2ezoipe

1 reference

https://api.fatcat.wiki/v0/release/4zemw2qai5cv7ejd2tm2ezoipe

24 November 2022

based on heuristic

mapped directly with Wikidata item

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

18 September 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q30757350&oldid=2047599026"