(Q30793293)

13 October 2017

Simultaneous use of solution NMR and X-ray data in REFMAC5 for joint refinement/detection of structural differences (English)

1 reference

13 October 2017

4

1 reference

13 October 2017

6

1 reference

13 October 2017

Enrico Ravera

2

0 references

author name string

Mauro Rinaldelli

series ordinal

1

1 reference

13 October 2017

Vito Calderone

series ordinal

3

1 reference

13 October 2017

Garib N Murshudov

series ordinal

5

1 reference

13 October 2017

language of work or name

1 reference

19 March 2014

1 reference

Acta Crystallographica Section D: Biological Crystallography

13 October 2017

1 reference

13 October 2017

70

1 reference

13 October 2017

Pt 4

1 reference

13 October 2017

958-967

1 reference

MaxOcc: a web portal for maximum occurrence analysis

13 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Simultaneous single-structure and bundle representation of protein NMR structures in torsion angle space

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Protein structure determination from pseudocontact shifts using ROSETTA.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

The catalytic domain of MMP-1 studied through tagged lanthanides

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

High-resolution membrane protein structure by joint calculations with solid-state NMR and X-ray experimental data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

REFMAC5 for the refinement of macromolecular crystal structures

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Overview of the CCP4 suite and current developments

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Systematic comparison of crystal and NMR protein structures deposited in the protein data bank

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Conformational space of flexible biological macromolecules from average data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Paramagnetic labelling of proteins and oligonucleotides for NMR.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Accurate solution structures of proteins from X-ray data and a minimal set of NMR data: calmodulin-peptide complexes as examples

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Paramagnetic shifts in solid-state NMR of proteins to elicit structural information

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Design, synthesis, and evaluation of a lanthanide chelating protein probe: CLaNP-5 yields predictable paramagnetic effects independent of environment.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Free R value: a novel statistical quantity for assessing the accuracy of crystal structures

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Structure determination of a Galectin-3-carbohydrate complex using paramagnetism-based NMR constraints

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Simultaneous NMR study of protein structure and dynamics using conservative mutagenesis.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Refined solution structure of the 82-kDa enzyme malate synthase G from joint NMR and synchrotron SAXS restraints

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Open-to-closed transition in apo maltose-binding protein observed by paramagnetic NMR

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Local and global structure of the monomeric subunit of the potassium channel KcsA probed by NMR.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Crystallographic R factor refinement by molecular dynamics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

A model of interdomain mobility in a multidomain protein

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Solution structure and dynamics of the complex between cytochrome c and cytochrome c peroxidase determined by paramagnetic NMR

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

The Buccaneer software for automated model building. 1. Tracing protein chains

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Paramagnetic tagging of diamagnetic proteins for solution NMR.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Determination of protein backbone structures from residual dipolar couplings

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Automated NMR structure calculation with CYANA

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Residual dipolar couplings in structure determination of biomolecules

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Refinement of macromolecular structures by the maximum-likelihood method

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Joint refinement as a tool for thorough comparison between NMR and X-ray data and structures of HU protein

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Paramagnetism-based versus classical constraints: an analysis of the solution structure of Ca Ln calbindin D9k

14 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

14 July 2018

https://api.crossref.org/works/10.1107%2FS1399004713034160

A dipolar coupling based strategy for simultaneous resonance assignment and structure determination of protein backbones

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Solution structure of Ca(2+)-calmodulin reveals flexible hand-like properties of its domains

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Analysis of slow interdomain motion of macromolecules using NMR relaxation data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Structural and dynamic analysis of residual dipolar coupling data for proteins

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

What is the average conformation of bacteriophage T4 lysozyme in solution? A domain orientation study using dipolar couplings measured by solution NMR.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Study of conformational rearrangement and refinement of structural homology models by the use of heteronuclear dipolar couplings

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Automated protein model building combined with iterative structure refinement

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

X-ray crystallography and NMR reveal complementary views of structure and dynamics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Protein structure refinement based on paramagnetic NMR shifts: applications to wild-type and mutant forms of cytochrome c.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Nuclear magnetic dipole interactions in field-oriented proteins: information for structure determination in solution

14 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

14 July 2018

https://api.crossref.org/works/10.1107%2FS1399004713034160

Simultaneous refinement of the structure of BPTI against NMR data measured in solution and X-ray diffraction data measured in single crystals

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Quantitative Determination of Mononucleotide Conformations in Solution using Lanthanide Ion Shift and Broadening NMR Probes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Backbone dynamics of calmodulin studied by 15N relaxation using inverse detected two-dimensional NMR spectroscopy: the central helix is flexible.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Partial Orientation of Oxidized and Reduced Cytochromeb5at High Magnetic Fields: Magnetic Susceptibility Anisotropy Contributions and Consequences for Protein Solution Structure Determination

14 July 2018

1 reference

https://api.crossref.org/works/10.1107%2FS1399004713034160

Interdomain flexibility in full-length matrix metalloproteinase-1 (MMP-1).

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS1399004713034160

Joint X-ray and NMR refinement of the yeast L30e-mRNA complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS1399004713034160

Narrowing the conformational space sampled by two-domain proteins with paramagnetic probes in both domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS1399004713034160

Improving the accuracy of NMR structures of large proteins using pseudocontact shifts as long-range restraints.

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS1399004713034160

Ribosomal Protein L9: A Structure Determination by the Combined Use of X-ray Crystallography and NMR Spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS1399004713034160

Lanthanide labeling offers fast NMR approach to 3D structure determinations of protein-protein complexes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS1399004713034160

A dipicolinic acid tag for rigid lanthanide tagging of proteins and paramagnetic NMR spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS1399004713034160

Evaluation of backbone proton positions and dynamics in a small protein by liquid crystal NMR spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS1399004713034160

Validation of Protein Structure from Anisotropic Carbonyl Chemical Shifts in a Dilute Liquid Crystalline Phase

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS1399004713034160

The use of pseudocontact shifts to refine solution structures of paramagnetic metalloproteins: Met80Ala cyano-cytochrome c as an example

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS1399004713034160

The oligomerization domain of p53: Crystal structure of the trigonal form

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS1399004713034160

Combining experimental information from crystal and solution studies: joint X-ray and NMR refinement

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS1399004713034160

Domain–domain motions in proteins from time-modulated pseudocontact shifts

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS1399004713034160

Protein Alignment by a Coexpressed Lanthanide-Binding Tag for the Measurement of Residual Dipolar Couplings

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS1399004713034160

13C Direct Detected NMR Increases the Detectability of Residual Dipolar Couplings

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS1399004713034160

Magnetic susceptibility in paramagnetic NMR

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS1399004713034160

Moving the frontiers in solution and solid-state bioNMR

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS1399004713034160

Conformational freedom of metalloproteins revealed by paramagnetism-assisted NMR

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS1399004713034160

Solid-State NMR Crystallography through Paramagnetic Restraints

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS1399004713034160

Perspectives in paramagnetic NMR of metalloproteins

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4306559

Visualizing spatially correlated dynamics that directs RNA conformational transitions

25 November 2018

1 reference

https://api.crossref.org/works/10.1107%2FS1399004713034160

Validation of a lanthanide tag for the analysis of protein dynamics by paramagnetic NMR spectroscopy

21 January 2018

1 reference

12 December 2020

Concordance of residual dipolar couplings, backbone order parameters and crystallographic B-factors for a small alpha/beta protein: a unified picture of high probability, fast atomic motions in proteins

1 reference

12 December 2020

Orienting domains in proteins using dipolar couplings measured by liquid-state NMR: differences in solution and crystal forms of maltodextrin binding protein loaded with beta-cyclodextrin

1 reference

12 December 2020

Visualization of the encounter ensemble of the transient electron transfer complex of cytochrome c and cytochrome c peroxidase

1 reference

12 December 2020

On the use of pseudocontact shifts in the structure determination of metalloproteins

1 reference

12 December 2020

Temperature dependence of protein backbone motion from carbonyl 13C and amide 15N NMR relaxation

1 reference

12 December 2020

Structure of the Complex between Plastocyanin and Cytochromeffrom the CyanobacteriumNostocsp. PCC 7119 as Determined by Paramagnetic NMR

1 reference

12 December 2020

10.1107/S1399004713034160

Identifiers

DOI

1 reference

13 October 2017

1 reference

13 October 2017

PubMed publication ID

24699641

1 reference