(Q30829889)

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Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis (English)

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

0 references

1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

high-throughput sequencing

1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

Gregory B. Gloor

6

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

author name string

Andrew D Fernandes

1

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

Jennifer Ns Reid

2

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

Jean M Macklaim

3

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

Thomas A McMurrough

4

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

David R Edgell

5

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

publication date

5 May 2014

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

2

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

15

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

describes a project that uses

object named as

DESeq

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

0 references

https://scigraph.springernature.com/pub.10.1186/2049-2618-2-15

0 references

Control of catalytic efficiency by a coevolving network of catalytic and noncatalytic residues

1 reference

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RNA-seq differential expression studies: more sequence or more replication?

1 reference

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Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

1 reference

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ANOVA-like differential expression (ALDEx) analysis for mixed population RNA-Seq

1 reference

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A statistical framework for power calculations in ChIP-seq experiments

1 reference

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Empirical Bayesian analysis of paired high-throughput sequencing data with a beta-binomial distribution

1 reference

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A comparison of methods for differential expression analysis of RNA-seq data

1 reference

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A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

1 reference

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1 reference

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Dirichlet multinomial mixtures: generative models for microbial metagenomics

1 reference

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Experimental and analytical tools for studying the human microbiome

1 reference

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21 June 2018

Finding consistent patterns: a nonparametric approach for identifying differential expression in RNA-Seq data

1 reference

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21 June 2018

ReCount: a multi-experiment resource of analysis-ready RNA-seq gene count datasets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030730

21 June 2018

Differential expression in RNA-seq: a matter of depth

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030730

21 June 2018

Evaluating gene expression in C57BL/6J and DBA/2J mouse striatum using RNA-Seq and microarrays

1 reference

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21 June 2018

Microbiome profiling by illumina sequencing of combinatorial sequence-tagged PCR products

1 reference

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21 June 2018

Differential expression analysis for sequence count data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030730

21 June 2018

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030730

21 June 2018

Statistical design and analysis of RNA sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030730

21 June 2018

QIIME allows analysis of high-throughput community sequencing data

1 reference

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21 June 2018

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

1 reference

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Univariate statistical analysis of environmental (compositional) data: problems and possibilities

1 reference

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Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology.

1 reference

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Interdependence of cell growth and gene expression: origins and consequences.

1 reference

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Statistical analysis of wines using a robust compositional biplot

1 reference

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1 reference

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12 December 2020

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inferred from PubMed ID database lookup

Identifiers

10.1186/2049-2618-2-15

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/2049-2618-2-15

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 September 2017

ResearchGate publication ID

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