(Q30837295)

13 October 2017

A Hidden Markov Model to estimate population mixture and allelic copy-numbers in cancers using Affymetrix SNP arrays (English)

1 reference

13 October 2017

0 references

1 reference

Claus Lindbjerg Andersen

series ordinal

2

1 reference

13 October 2017

3

1 reference

13 October 2017

Carsten Wiuf

5

0 references

author name string

Philippe Lamy

series ordinal

1

1 reference

PMCID

2206057

13 October 2017

Niels Torring

series ordinal

4

1 reference

PMCID

2206057

13 October 2017

language of work or name

1 reference

9 November 2007

1 reference

13 October 2017

1 reference

13 October 2017

8

1 reference

13 October 2017

434

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2105-8-434

13 October 2017

0 references

cites work

Genotyping and annotation of Affymetrix SNP arrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206057

Frequent occurrence of uniparental disomy in colorectal cancer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206057

Inferring loss-of-heterozygosity from unpaired tumors using high-density oligonucleotide SNP arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206057

Coverage and characteristics of the Affymetrix GeneChip Human Mapping 100K SNP set.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206057

CARAT: a novel method for allelic detection of DNA copy number changes using high density oligonucleotide arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206057

Allele-specific amplification in cancer revealed by SNP array analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206057

Bladder cancer stage and outcome by array-based comparative genomic hybridization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206057

A robust algorithm for copy number detection using high-density oligonucleotide single nucleotide polymorphism genotyping arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206057

High-throughput SNP genotyping on universal bead arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206057

Whole-genome patterns of common DNA variation in three human populations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206057

Circular binary segmentation for the analysis of array-based DNA copy number data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206057

An integrated view of copy number and allelic alterations in the cancer genome using single nucleotide polymorphism arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206057

dChipSNP: significance curve and clustering of SNP-array-based loss-of-heterozygosity data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206057

High-resolution analysis of DNA copy number using oligonucleotide microarrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206057

Genome-wide loss of heterozygosity analysis from laser capture microdissected prostate cancer using single nucleotide polymorphic allele (SNP) arrays and a novel bioinformatics platform dChipSNP.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206057

Use of molecular variation in the NCBI dbSNP database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206057

DNA copy number alterations in prostate cancers: a combined analysis of published CGH studies.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206057

Genome-wide analysis of allelic imbalance in prostate cancer using the Affymetrix 50K SNP mapping array

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206057

Role of activating fibroblast growth factor receptor 3 mutations in the development of bladder tumors.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206057

A genotype calling algorithm for affymetrix SNP arrays.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206057

Genotyping over 100,000 SNPs on a pair of oligonucleotide arrays.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206057

Dynamic model based algorithms for screening and genotyping over 100 K SNPs on oligonucleotide microarrays.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206057

Large-scale genotyping of complex DNA.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206057

Detection of genetic alterations in bladder tumors by comparative genomic hybridization and cytogenetic analysis

25 November 2018

1 reference

12 December 2020

High-density single nucleotide polymorphism array defines novel stage and location-dependent allelic imbalances in human bladder tumors

1 reference

12 December 2020

Clonality and genetic divergence in multifocal low-grade superficial urothelial carcinoma as determined by chromosome 9 and p53 deletion analysis

1 reference

12 December 2020

The significance of tumor heterogeneity for prediction of DNA ploidy of prostate cancer

1 reference

12 December 2020

Genome-wide single nucleotide polymorphism analysis reveals frequent partial uniparental disomy due to somatic recombination in acute myeloid leukemias

1 reference

12 December 2020

Intratumoral nuclear morphologic heterogeneity in prostate cancer

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2105-8-434

1 reference

journals/bmcbi/LamyADTW07

13 October 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

13 October 2017

1 reference

PMCID

2206057