(Q30858984)

27 June 2017

title

PDB-wide collection of binding data: current status of the PDBbind database (English)

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27 June 2017

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Zhixiong Zhao

6

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author name string

Zhihai Liu

1

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27 June 2017

Yan Li

2

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27 June 2017

Li Han

3

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27 June 2017

Jie Li

4

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27 June 2017

Jie Liu

5

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27 June 2017

Wei Nie

7

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27 June 2017

Yuchen Liu

8

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27 June 2017

Renxiao Wang

9

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27 June 2017

language of work or name

English

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publication date

9 October 2014

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27 June 2017

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27 June 2017

volume

31

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27 June 2017

issue

3

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27 June 2017

page(s)

405-412

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Binding MOAD, a high-quality protein-ligand database.

27 June 2017

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

Announcing the worldwide Protein Data Bank

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

AffinDB: a freely accessible database of affinities for protein-ligand complexes from the PDB

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

PubChem: Integrated Platform of Small Molecules and Biological Activities

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

Comparative assessment of scoring functions on a diverse test set.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

De novo design, synthesis and evaluation of benzylpiperazine derivatives as highly selective binders of Mcl-1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

NNScore: a neural-network-based scoring function for the characterization of protein-ligand complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

DrugLogit: logistic discrimination between drugs and nondrugs including disease-specificity by assigning probabilities based on molecular properties.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

ChEMBL: a large-scale bioactivity database for drug discovery

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

Relibase: design and development of a database for comprehensive analysis of protein-ligand interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

Combining machine learning systems and multiple docking simulation packages to improve docking prediction reliability for network pharmacology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

sc-PDB: an annotated database of druggable binding sites from the Protein Data Bank

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

PDBsum: summaries and analyses of PDB structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

ID-Score: a new empirical scoring function based on a comprehensive set of descriptors related to protein-ligand interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

Mining the characteristic interaction patterns on protein-protein binding interfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

Comparative assessment of scoring functions on an updated benchmark: 1. Compilation of the test set.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

Comparative assessment of scoring functions on an updated benchmark: 2. Evaluation methods and general results

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

Toward a quantitative theory of intrinsically disordered proteins and their function

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

Binding affinity prediction for protein-ligand complexes based on β contacts and B factor.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

N-(thiazol-2-yl)-2-thiophene carboxamide derivatives as Abl inhibitors identified by a pharmacophore-based database screening of commercially available compounds

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

Protein Ligand Database (PLD): additional understanding of the nature and specificity of protein–ligand complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

Ligand-protein database: linking protein-ligand complex structures to binding data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

Discovery of a novel binding trench in HIV integrase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

PHOENIX: a scoring function for affinity prediction derived using high-resolution crystal structures and calorimetry measurements

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

A dataset of protein-protein interfaces generated with a sequence-order-independent comparison technique

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

Gene ontology: tool for the unification of biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

Further development and validation of empirical scoring functions for structure-based binding affinity prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

The PDBbind database: collection of binding affinities for protein-ligand complexes with known three-dimensional structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

The PDBbind database: methodologies and updates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

PubChem BioAssay: 2014 update

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

Rational approach to AIDS drug design through structural biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

Het-PDB Navi.: a database for protein-small molecule interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

Ligand Identification Scoring Algorithm (LISA).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

Development of the knowledge-based and empirical combined scoring algorithm (KECSA) to score protein-ligand interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

SFCscore(RF): a random forest-based scoring function for improved affinity prediction of protein-ligand complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU626

10.1093/BIOINFORMATICS/BTU626

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/LiuLHLLZNLW15

27 June 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference