(Q30871451)

14 August 2017

A statistical approach for 5' splice site prediction using short sequence motifs and without encoding sequence data (English)

1 reference

14 August 2017

0 references

Atmakuri Ramakrishna Rao

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25420551%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

author name string

Prabina Kumar Meher

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25420551%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Tanmaya Kumar Sahu

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25420551%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Sant Dass Wahi

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25420551%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

language of work or name

1 reference

25 November 2014

1 reference

14 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25420551%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

volume

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25420551%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

page(s)

362

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25420551%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 2.0 Generic

9 June 2020

copyright license

start time

25 November 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1186/s12859-014-0362-6

0 references

cites work

Fast and SNP-tolerant detection of complex variants and splicing in short reads

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702320

Optimal spliced alignments of short sequence reads

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702320

Accurate splice site prediction using support vector machines

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702320

Features of 5'-splice-site efficiency derived from disease-causing mutations and comparative genomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702320

Splice site identification using probabilistic parameters and SVM classification.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702320

Comprehensive splice-site analysis using comparative genomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702320

Feature selection for splice site prediction: a new method using EDA-based feature ranking

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702320

Feature subset selection for splice site prediction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702320

The U1 snRNP protein U1C recognizes the 5' splice site in the absence of base pairing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702320

Pre-mRNA secondary structure prediction aids splice site prediction.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702320

Sequences upstream of the branch site are required to form helix II between U2 and U6 snRNA in a trans-splicing reaction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702320

GeneSplicer: a new computational method for splice site prediction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702320

Recognition of the 5' splice site by the spliceosome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702320

Prediction of locally optimal splice sites in plant pre-mRNA with applications to gene identification in Arabidopsis thaliana genomic DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702320

Improved splice site detection in Genie

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702320

Prediction of complete gene structures in human genomic DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702320

Computer methods to locate signals in nucleic acid sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702320

Markov encoding for detecting signals in genomic sequences.

21 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-014-0362-6

Engineering support vector machine kernels that recognize translation initiation sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-014-0362-6

Identifying splicing sites in eukaryotic RNA: support vector machine approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-014-0362-6

An approach of encoding for prediction of splice sites using SVM.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-014-0362-6

The effect of nonsense codons on splicing: a genomic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-014-0362-6

Comparative analysis detects dependencies among the 5' splice-site positions

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-014-0362-6

Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-014-0362-6

The use of the area under the ROC curve in the evaluation of machine learning algorithms

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-014-0362-6

Splice site detection with a higher-order markov model implemented on a neural network.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702320

A novel U1/U5 interaction indicates proximity between U1 and U5 snRNAs during an early step of mRNA splicing.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702320

A weight array method for splicing signal analysis.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702320

Specific alterations of U1-C protein or U1 small nuclear RNA can eliminate the requirement of Prp28p, an essential DEAD box splicing factor

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25420551

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12859-014-0362-6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25420551%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcbi/MeherSRW14

9 June 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25420551%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

PubMed publication ID

25420551

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25420551%20AND%20SRC:MED&resulttype=core&format=json