(Q30882392)

13 August 2017

Genome-scale analysis of the uses of the Escherichia coli genome: model-driven analysis of heterogeneous data sets (English)

1 reference

13 August 2017

Genome-Scale Analysis of the Uses of the Escherichia coli Genome: Model-Driven Analysis of Heterogeneous Data Sets (English)

1 reference

Crossref

DOI

https://api.crossref.org/works/10.1128/JB.185.21.6392-6399.2003

22 March 2024

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14563874

gene expression profiling

22 March 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14563874

22 March 2024

bacterial genome

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14563874

modelling biological systems

22 March 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14563874

22 March 2024

1 reference

https://api.crossref.org/works/10.1128/JB.185.21.6392-6399.2003

22 March 2024

7

Bernhard Ø Palsson

1 reference

13 August 2017

Mingzhu Liu

3

1 reference

13 August 2017

Yu Qiu

4

1 reference

13 August 2017

Timothy E. Allen

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14563874

22 March 2024

Markus J. Herrgård

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14563874

22 March 2024

Jeremy D. Glasner

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14563874

22 March 2024

Frederick R. Blattner

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14563874

22 March 2024

Bernhard Ø Palsson

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14563874

22 March 2024

language of work or name

English

0 references

publication date

1 November 2003

1 reference

full work available at URL

13 August 2017

https://europepmc.org/articles/pmc219383?pdf=render

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14563874

https://europepmc.org/articles/PMC219383

22 March 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14563874

https://europepmc.org/articles/PMC219383?pdf=render

22 March 2024

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14563874

https://doi.org/10.1128/jb.185.21.6392-6399.2003

22 March 2024

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14563874

https://journals.asm.org/doi/pdf/10.1128/JB.185.21.6392-6399.2003

22 March 2024

1 reference

Crossref

DOI

https://api.crossref.org/works/10.1128/JB.185.21.6392-6399.2003

22 March 2024

published in

Journal of Bacteriology

1 reference

13 August 2017

185

1 reference

13 August 2017

21

1 reference

13 August 2017

6392-6399

1 reference

Thirteen years of building constraint-based in silico models of Escherichia coli

13 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

ASAP, a systematic annotation package for community analysis of genomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

Co-expression pattern from DNA microarray experiments as a tool for operon prediction

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

Optimization of oligonucleotide-based DNA microarrays.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

Wavelet transforms for the characterization and detection of repeating motifs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

Prokaryotic RNA preparation methods useful for high density array analysis: comparison of two approaches

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

Interrelating different types of genomic data, from proteome to secretome: 'oming in on function

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

Whole-genome expression analysis: challenges beyond clustering

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

Metabolic modeling of microbial strains in silico.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

High-density microarray-mediated gene expression profiling of Escherichia coli

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

RNA expression analysis using a 30 base pair resolution Escherichia coli genome array

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

Fundamental patterns underlying gene expression profiles: simplicity from complexity

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

Global gene expression profiling in Escherichia coli K12. The effects of integration host factor

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

A DNA structural atlas for Escherichia coli

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

Functional genomics: expression analysis of Escherichia coli growing on minimal and rich media

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

Genome-wide expression profiling in Escherichia coli K-12

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

KEGG: Kyoto Encyclopedia of Genes and Genomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

MPW: the Metabolic Pathways Database

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

The complete genome sequence of Escherichia coli K-12

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

Chromosomes in living Escherichia coli cells are segregated into domains of supercoiling

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

DNA gyrase binds to the family of prokaryotic repetitive extragenic palindromic sequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

Transcription regulates oxolinic acid-induced DNA gyrase cleavage at specific sites on the E. coli chromosome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

Ribosomal protein limitations in Escherichia coli under conditions of high translational activity

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

Sequence-based analysis of metabolic demands for protein synthesis in prokaryotes

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

In silico biology through "omics".

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

Global expression profiling of acetate-grown Escherichia coli

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

A gene expression map for Caenorhabditis elegans.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

Dynamical analysis of gene networks requires both mRNA and protein expression information.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219383

The value of microarray techniques for quantitative gene profiling in molecular diagnostics

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/14563874

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

HinCyc: a knowledge base of the complete genome and metabolic pathways of H. influenzae

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/14563874

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

MultiFun, a multifunctional classification scheme for Escherichia coli K-12 gene products

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/14563874

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

1 reference

13 August 2017

1 reference

13 August 2017

1 reference