(Q30882903)

18 August 2017

Trp-cage: folding free energy landscape in explicit water (English)

1 reference

18 August 2017

Trp-cage: Folding free energy landscape in explicit water (English)

1 reference

https://api.crossref.org/works/10.1073/PNAS.2233312100

25 March 2024

1 reference

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14581616

25 March 2024

1

Ruhong Zhou

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14581616

25 March 2024

language of work or name

English

0 references

publication date

27 October 2003

1 reference

full work available at URL

18 August 2017

https://europepmc.org/articles/pmc263783?pdf=render

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14581616

https://europepmc.org/articles/PMC263783

25 March 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14581616

https://europepmc.org/articles/PMC263783?pdf=render

25 March 2024

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14581616

https://doi.org/10.1073/pnas.2233312100

25 March 2024

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14581616

https://pnas.org/doi/pdf/10.1073/pnas.2233312100

25 March 2024

1 reference

https://api.crossref.org/works/10.1073/PNAS.2233312100

Proceedings of the National Academy of Sciences of the United States of America

25 March 2024

published in

1 reference

18 August 2017

100

1 reference

18 August 2017

23

1 reference

18 August 2017

13280-13285

1 reference

Understanding folding and design: replica-exchange simulations of "Trp-cage" miniproteins

18 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263783

The Trp cage: folding kinetics and unfolded state topology via molecular dynamics simulations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263783

Absolute comparison of simulated and experimental protein-folding dynamics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263783

Smaller and faster: the 20-residue Trp-cage protein folds in 4 micros

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263783

Can a continuum solvent model reproduce the free energy landscape of a beta -hairpin folding in water?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263783

All-Atom Structure Prediction and Folding Simulations of a Stable Protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263783

Designing a 20-residue protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263783

Protein folding mediated by solvation: water expulsion and formation of the hydrophobic core occur after the structural collapse

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263783

The free energy landscape for beta hairpin folding in explicit water

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263783

Mechanisms and kinetics of beta-hairpin formation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263783

Chemical physics of protein folding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263783

Folding dynamics and mechanism of beta-hairpin formation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263783

Folding funnels and energy landscapes of larger proteins within the capillarity approximation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263783

From Levinthal to pathways to funnels

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263783

Are buried salt bridges important for protein stability and conformational specificity?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263783

Strength and co-operativity of contributions of surface salt bridges to protein stability

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=263783

Spatial profiling of protein hydrophobicity: native vs. decoy structures

21 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2233312100

Solvation effects and driving forces for protein thermodynamic and kinetic cooperativity: how adequate is native-centric topological modeling?

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2233312100

Replica-exchange molecular dynamics method for protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2233312100

Exploring the energy landscape of a beta hairpin in explicit solvent

21 January 2018

1 reference

12 December 2020

Potentials of mean force between ionizable amino acid side chains in water

1 reference

12 December 2020

Optimized Monte Carlo data analysis

1 reference

12 December 2020

Large-amplitude nonlinear motions in proteins

1 reference

12 December 2020

Semianalytical treatment of solvation for molecular mechanics and dynamics

series ordinal

10

1 reference

https://api.crossref.org/works/10.1073/PNAS.2233312100

25 March 2024

Identifiers

1 reference

18 August 2017

0 references

1 reference

18 August 2017

1 reference