(Q30899509)

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Automated Validation of Results and Removal of Fragment Ion Interferences in Targeted Analysis of Data-independent Acquisition Mass Spectrometry (MS) using SWATHProphet

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Europe PubMed Central

PMC publication ID

20 September 2017

Automated Validation of Results and Removal of Fragment Ion Interferences in Targeted Analysis of Data-independent Acquisition Mass Spectrometry (MS) using SWATHProphet (English)

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

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Leroy Hood

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1

object named as

Andrew Keller

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Europe PubMed Central

PMC publication ID

20 September 2017

author name string

Samuel L Bader

2

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Europe PubMed Central

PMC publication ID

20 September 2017

David Shteynberg

3

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

Robert L Moritz

5

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Europe PubMed Central

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20 September 2017

publication date

24 February 2015

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Europe PubMed Central

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20 September 2017

Molecular & Cellular Proteomics

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Europe PubMed Central

PMC publication ID

20 September 2017

14

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Europe PubMed Central

PMC publication ID

20 September 2017

5

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

1411-1418

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

Multiplexed and data-independent tandem mass spectrometry for global proteome profiling.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424409

21 June 2018

Multiplexed MS/MS for improved data-independent acquisition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424409

21 June 2018

A cross-platform toolkit for mass spectrometry and proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424409

21 June 2018

Using iRT, a normalized retention time for more targeted measurement of peptides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424409

21 June 2018

A computational tool to detect and avoid redundancy in selected reaction monitoring

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424409

21 June 2018

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424409

21 June 2018

iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424409

21 June 2018

mProphet: automated data processing and statistical validation for large-scale SRM experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424409

21 June 2018

More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424409

21 June 2018

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424409

21 June 2018

Precursor acquisition independent from ion count: how to dive deeper into the proteomics ocean.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424409

21 June 2018

Building consensus spectral libraries for peptide identification in proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424409

21 June 2018

UPLC/MS(E); a new approach for generating molecular fragment information for biomarker structure elucidation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424409

21 June 2018

A uniform proteomics MS/MS analysis platform utilizing open XML file formats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424409

21 June 2018

Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424409

21 June 2018

TANDEM: matching proteins with tandem mass spectra

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424409

21 June 2018

A statistical model for identifying proteins by tandem mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424409

21 June 2018

Mass spectrometry-based proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424409

21 June 2018

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4424409

21 June 2018

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data

1 reference

https://api.crossref.org/works/10.1074%2FMCP.O114.044917

21 January 2018

Identifiers

10.1074/MCP.O114.044917

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

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