(Q30902983)

27 June 2017

title

METAXA2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732605%20AND%20SRC:MED&resulttype=core&format=json

7 May 2020

1 reference

8

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7 May 2020

Johan Bengtsson-Palme

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732605%20AND%20SRC:MED&resulttype=core&format=json

7 May 2020

Martin Hartmann

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732605%20AND%20SRC:MED&resulttype=core&format=json

7 May 2020

Karl Eriksson

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732605%20AND%20SRC:MED&resulttype=core&format=json

7 May 2020

Chandan Pal

4

1 reference

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7 May 2020

Chandan Pal

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732605%20AND%20SRC:MED&resulttype=core&format=json

7 May 2020

Kaisa Thorell

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732605%20AND%20SRC:MED&resulttype=core&format=json

7 May 2020

D.G. Joakim Larsson

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732605%20AND%20SRC:MED&resulttype=core&format=json

7 May 2020

language of work or name

English

0 references

publication date

2 March 2015

1 reference

Molecular Ecology Resources

27 June 2017

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732605%20AND%20SRC:MED&resulttype=core&format=json

7 May 2020

volume

15

1 reference

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7 May 2020

issue

6

1 reference

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7 May 2020

page(s)

1403-1414

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732605%20AND%20SRC:MED&resulttype=core&format=json

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 May 2020

cites work

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

Metaxa: a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

Megraft: a software package to graft ribosomal small subunit (16S/18S) fragments onto full-length sequences for accurate species richness and sequencing depth analysis in pyrosequencing-length metagenomes and similar environmental datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

QIIME allows analysis of high-throughput community sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

MitoZoa 2.0: a database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

Bacterial communities associated with culex mosquito larvae and two emergent aquatic plants of bioremediation importance

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

Accelerated Profile HMM Searches

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

Search and clustering orders of magnitude faster than BLAST

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

Oligotyping: Differentiating between closely related microbial taxa using 16S rRNA gene data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

Reconstruction of ribosomal RNA genes from metagenomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

Metagenomes of Mediterranean Coastal Lagoons

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

Human and environmental impacts on river sediment microbial communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

V-Xtractor: an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

Introduction to the analysis of environmental sequences: metagenomics with MEGAN.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

Recent developments in the MAFFT multiple sequence alignment program

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

Nutrient enrichment increased species richness of leaf litter fungal assemblages in a tropical forest

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

Performance comparison of benchtop high-throughput sequencing platforms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

Taxonomic classification of bacterial 16S rRNA genes using short sequencing reads: evaluation of effective study designs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

PCR biases distort bacterial and archaeal community structure in pyrosequencing datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

EMBOSS: the European Molecular Biology Open Software Suite

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

An evaluation of LSU rDNA D1-D2 sequences for their use in species identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

Towards next-generation biodiversity assessment using DNA metabarcoding

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

Importance of saprotrophic freshwater fungi for pollen degradation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

The future of environmental DNA in ecology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12399

21 January 2018

Identifiers

DOI

10.1111/1755-0998.12399

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732605%20AND%20SRC:MED&resulttype=core&format=json

7 May 2020

1 reference