(Q48057513)

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Metaxa: a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets

scientific article published on 15 June 2011

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Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/21674231

Metaxa: a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets (English)

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Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/21674231

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Johan Bengtsson-Palme

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8 February 2018

http://europepmc.org/abstract/MED/21674231

2

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Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/21674231

Kessy Abarenkov

7

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8 February 2018

http://europepmc.org/abstract/MED/21674231

Rolf Henrik Nilsson

10

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8 February 2018

http://europepmc.org/abstract/MED/21674231

Martin Hartmann

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Martin Hartmann

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Zheng Wang

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8 February 2018

http://europepmc.org/abstract/MED/21674231

Belle Damodara Shenoy

5

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8 February 2018

http://europepmc.org/abstract/MED/21674231

Gwen-Aëlle Grelet

6

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8 February 2018

http://europepmc.org/abstract/MED/21674231

Anna Petri

8

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8 February 2018

http://europepmc.org/abstract/MED/21674231

Magnus Alm Rosenblad

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8 February 2018

http://europepmc.org/abstract/MED/21674231

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15 June 2011

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8 February 2018

http://europepmc.org/abstract/MED/21674231

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5

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Antonie van Leeuwenhoek

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8 February 2018

http://europepmc.org/abstract/MED/21674231

100

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8 February 2018

http://europepmc.org/abstract/MED/21674231

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8 February 2018

http://europepmc.org/abstract/MED/21674231

471-475

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Europe PubMed Central

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8 February 2018

http://europepmc.org/abstract/MED/21674231

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

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21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9598-6

21 January 2018

Whole-genome re-sequencing

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9598-6

21 January 2018

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9598-6

21 January 2018

Global sequencing: a review of current molecular data and new methods available to assess microbial diversity

1 reference

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21 January 2018

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9598-6

21 January 2018

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

1 reference

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Profile hidden Markov models

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9598-6

21 January 2018

V-Xtractor: an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences

1 reference

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21 January 2018

The promise and pitfalls of sequence-based identification of plant-pathogenic fungi and oomycetes

1 reference

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21 January 2018

Recent developments in the MAFFT multiple sequence alignment program

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9598-6

21 January 2018

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9598-6

21 January 2018

GOBASE: an organelle genome database

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9598-6

21 January 2018

Improved tools for biological sequence comparison

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9598-6

21 January 2018

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9598-6

21 January 2018

EMBOSS: the European Molecular Biology Open Software Suite

1 reference

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21 January 2018

An outlook on the fungal internal transcribed spacer sequences in GenBank and the introduction of a web-based tool for the exploration of fungal diversity

1 reference

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21 January 2018

The UCSC Archaeal Genome Browser

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9598-6

21 January 2018

Next-generation DNA sequencing

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9598-6

21 January 2018

DNA technologies: what's next applied to microbiology research?

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9598-6

21 January 2018

A primer on metagenomics

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9598-6

21 January 2018

MitoZoa: A curated mitochondrial genome database of metazoans for comparative genomics studies

1 reference

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21 January 2018

Preserving Accuracy in GenBank

1 reference

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21 January 2018

Identifiers

10.1007/S10482-011-9598-6

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/21674231

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/21674231

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