(Q30908206)

11 September 2017

Analysis and visualization of RNA-Seq expression data using RStudio, Bioconductor, and Integrated Genome Browser (English)

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11 September 2017

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1

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11 September 2017

Ivory Clabaugh Blakley

2

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11 September 2017

Sridharan Jagadeesan

3

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11 September 2017

Jeff Harper

4

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11 September 2017

Gad Miller

5

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11 September 2017

Nurit Firon

6

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11 September 2017

language of work or name

English

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publication date

1 January 2015

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Methods in Molecular Biology

11 September 2017

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11 September 2017

1284

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11 September 2017

481-501

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describes a project that uses

11 September 2017

RStudio

1 reference

18 June 2022

https://europepmc.org/article/PMC/4387895

based on heuristic

inferred from PubMed Central ID database lookup

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/4387895

based on heuristic

inferred from PubMed Central ID database lookup

cites work

edgeR for differential RNA-seq and ChIP-seq analysis: an application to stem cell biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4387895

Gene ontology analysis for RNA-seq: accounting for selection bias

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4387895

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4387895

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4387895

Transcript length bias in RNA-seq data confounds systems biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4387895

Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4387895

The transcriptional landscape of the yeast genome defined by RNA sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4387895

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4387895

The beginning of the end for microarrays?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4387895

10.1007/978-1-4939-2444-8_24

25 November 2018

Identifiers

DOI

1 reference

11 September 2017

1 reference

11 September 2017

PubMed publication ID

25757788

1 reference