(Q30929779)

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A general approach for identification of RNA-protein cross-linking sites within native human spliceosomal small nuclear ribonucleoproteins (snRNPs). Analysis of RNA-protein contacts in native U1 and U4/U6.U5 snRNPs

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Europe PubMed Central

PubMed publication ID

27 June 2017

A general approach for identification of RNA-protein cross-linking sites within native human spliceosomal small nuclear ribonucleoproteins (snRNPs). Analysis of RNA-protein contacts in native U1 and U4/U6.U5 snRNPs (English)

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Europe PubMed Central

PubMed publication ID

27 June 2017

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ribonucleoprotein complex

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based on heuristic

inferred from title

Reinhard Georg Lührmann

5

object named as

Lührmann R

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Europe PubMed Central

PubMed publication ID

27 June 2017

author name string

Urlaub H

1

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Europe PubMed Central

PubMed publication ID

27 June 2017

Hartmuth K

2

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Europe PubMed Central

PubMed publication ID

27 June 2017

Kostka S

3

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Europe PubMed Central

PubMed publication ID

27 June 2017

Grelle G

4

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Europe PubMed Central

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27 June 2017

language of work or name

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publication date

1 December 2000

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Europe PubMed Central

PubMed publication ID

27 June 2017

Journal of Biological Chemistry

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Europe PubMed Central

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27 June 2017

275

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Europe PubMed Central

PubMed publication ID

27 June 2017

52

1 reference

Europe PubMed Central

PubMed publication ID

27 June 2017

41458-41468

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Europe PubMed Central

PubMed publication ID

27 June 2017

The structure and function of proteins involved in mammalian pre-mRNA splicing

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Mechanical devices of the spliceosome: motors, clocks, springs, and things

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Structure and assembly of the spliceosomal small nuclear ribonucleoprotein particles

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Structure of the small nuclear RNP particle U1: identification of the two structural protuberances with RNP-antigens A and 70K

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

A common RNA recognition motif identified within a defined U1 RNA binding domain of the 70K U1 snRNP protein

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Direct, sequence-specific binding of the human U1-70K ribonucleoprotein antigen protein to loop I of U1 small nuclear RNA.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

A specific 31-nucleotide domain of U1 RNA directly interacts with the 70K small nuclear ribonucleoprotein component

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

The U1 RNA-binding site of the U1 small nuclear ribonucleoprotein (snRNP)-associated A protein suggests a similarity with U2 snRNPs

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Major determinants of the specificity of interaction between small nuclear ribonucleoproteins U1A and U2B'' and their cognate RNAs

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Crystal structure of the spliceosomal U2B"-U2A' protein complex bound to a fragment of U2 small nuclear RNA

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Functional interaction of a novel 15.5kD [U4/U6.U5] tri-snRNP protein with the 5' stem-loop of U4 snRNA

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

A doughnut-shaped heteromer of human Sm-like proteins binds to the 3'-end of U6 snRNA, thereby facilitating U4/U6 duplex formation in vitro

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Characterization of Sm-like proteins in yeast and their association with U6 snRNA

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Direct cross-linking of snRNP proteins F and 70K to snRNAs by ultra-violet radiation in situ

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Direct binding of small nuclear ribonucleoprotein G to the Sm site of small nuclear RNA. Ultraviolet light cross-linking of protein G to the AAU stretch within the Sm site (AAUUUGUGG) of U1 small nuclear ribonucleoprotein reconstituted in vitro

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Characterization of U6 snRNA-protein interactions

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Identification of an RNA-dependent ATPase activity in mammalian U5 snRNPs

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Structure-probing of U1 snRNPs gradually depleted of the U1-specific proteins A, C and 70k. Evidence that A interacts differentially with developmentally regulated mouse U1 snRNA variants

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

An unusual chemical reactivity of Sm site adenosines strongly correlates with proper assembly of core U snRNP particles.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Identification and sequence analysis of contact sites between ribosomal proteins and rRNA in Escherichia coli 30 S subunits by a new approach using matrix-assisted laser desorption/ionization-mass spectrometry combined with N-terminal microsequencin

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Evidence that U5 snRNP recognizes the 3' splice site for catalytic step II in mammals

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

An RNA-protein contact determined by 5-bromouridine substitution, photocrosslinking and sequencing

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Ion stability of nucleic acids in infrared matrix-assisted laser desorption/ionization mass spectrometry

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

An evolutionarily conserved U5 snRNP-specific protein is a GTP-binding factor closely related to the ribosomal translocase EF-2.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

The human U5-220kD protein (hPrp8) forms a stable RNA-free complex with several U5-specific proteins, including an RNA unwindase, a homologue of ribosomal elongation factor EF-2, and a novel WD-40 protein

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Prediction of protein secondary structure at better than 70% accuracy

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Structural basis for recognition of the tra mRNA precursor by the Sex-lethal protein

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Conserved loop I of U5 small nuclear RNA is dispensable for both catalytic steps of pre-mRNA splicing in HeLa nuclear extracts.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

A novel role for a U5 snRNP protein in 3' splice site selection.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

The C-terminal region of hPrp8 interacts with the conserved GU dinucleotide at the 5' splice site

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Functional interactions of Prp8 with both splice sites at the spliceosomal catalytic center

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Allele-specific genetic interactions between Prp8 and RNA active site residues suggest a function for Prp8 at the catalytic core of the spliceosome.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Protein modelling for all

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Crosslinking of elongation factor Tu to tRNA(Phe) by trans-diamminedichloroplatinum (II). Characterization of two crosslinking sites on EF-Tu

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

The invariant U5 snRNA loop 1 sequence is dispensable for the first catalytic step of pre-mRNA splicing in yeast

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M007434200

21 January 2018

Identifiers

10.1074/JBC.M007434200

1 reference

Europe PubMed Central

PubMed publication ID

27 June 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

27 June 2017

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