(Q30936152)

16 October 2017

ViVaMBC: estimating viral sequence variation in complex populations from illumina deep-sequencing data using model-based clustering (English)

1 reference

16 October 2017

Lieven Clement

2

0 references

Joke Reumers

object named as

Joke Reumers

3

0 references

Olivier Thas

object named as

Olivier Thas

11

0 references

Luc Bijnens

10

object named as

Luc Bijnens

1 reference

16 October 2017

Bie Verbist

1

1 reference

16 October 2017

Kim Thys

4

1 reference

16 October 2017

Alexander Vapirev

5

1 reference

16 October 2017

Willem Talloen

6

1 reference

16 October 2017

Yves Wetzels

7

1 reference

16 October 2017

Joris Meys

8

1 reference

16 October 2017

Jeroen Aerssens

9

1 reference

16 October 2017

22 February 2015

1 reference

16 October 2017

1 reference

16 October 2017

16

1 reference

16 October 2017

59

1 reference

Creative Commons Attribution 2.0 Generic

16 October 2017

start time

22 February 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Prevalence and evolution of low frequency HIV drug resistance mutations detected by ultra deep sequencing in patients experiencing first line antiretroviral therapy failure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369097

V-Phaser 2: variant inference for viral populations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369097

Benchmarking of viral haplotype reconstruction programmes: an overview of the capacities and limitations of currently available programmes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369097

Improved base-calling and quality scores for 454 sequencing based on a Hurdle Poisson model

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369097

LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369097

Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369097

Highly sensitive and specific detection of rare variants in mixed viral populations from massively parallel sequence data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369097

Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369097

QuRe: software for viral quasispecies reconstruction from next-generation sequencing data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369097

Ultrasensitive detection of rare mutations using next-generation targeted resequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369097

Genotype and SNP calling from next-generation sequencing data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369097

ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369097

Hepatitis C virus resistance to protease inhibitors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369097

Removing noise from pyrosequenced amplicons

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369097

New direct-acting antivirals' combination for the treatment of chronic hepatitis C.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369097

Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369097

Model-based quality assessment and base-calling for second-generation sequencing data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369097

Fast and accurate short read alignment with Burrows-Wheeler transform

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369097

Accurate whole human genome sequencing using reversible terminator chemistry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369097

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369097

Viral population estimation using pyrosequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369097

Quality scores and SNP detection in sequencing-by-synthesis systems

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369097

Base-calling of automated sequencer traces using phred. II. Error probabilities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369097

Analysis of context-dependent errors for illumina sequencing

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12859-015-0458-7

Deep sequencing of a genetically heterogeneous sample: local haplotype reconstruction and read error correction

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25887734

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12859-015-0458-7

1 reference

journals/bmcbi/VerbistCRTVTWMA15

16 October 2017

1 reference

DBLP Dataset 2021-01-02

release_cf22jgf2ejfdzflyzylbg7qopu

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/cf22jgf2ejfdzflyzylbg7qopu

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

16 October 2017

PubMed publication ID

25887734

1 reference