(Q30941065)

24 September 2017

Optimally choosing PWM motif databases and sequence scanning approaches based on ChIP-seq data (English)

1 reference

24 September 2017

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25927199%20AND%20SRC:MED&resulttype=core&format=json

Bożena Kamińska-Kaczmarek

10 June 2020

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25927199%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Bartek Wilczynski

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25927199%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

author name string

Norbert Dojer

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25927199%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Izabella Krystkowiak

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25927199%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

language of work or name

1 reference

1 May 2015

1 reference

24 September 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25927199%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

volume

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25927199%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

page(s)

140

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25927199%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 2.0 Generic

10 June 2020

copyright license

start time

1 May 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Improving analysis of transcription factor binding sites within ChIP-Seq data based on topological motif enrichment

1 reference

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TFBSshape: a motif database for DNA shape features of transcription factor binding sites

21 June 2018

1 reference

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JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

21 June 2018

1 reference

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Nencki Genomics Database--Ensembl funcgen enhanced with intersections, user data and genome-wide TFBS motifs.

21 June 2018

1 reference

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DNA-binding specificities of human transcription factors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4436866

21 June 2018

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SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates

21 June 2018

1 reference

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HOCOMOCO: a comprehensive collection of human transcription factor binding sites models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4436866

An integrated encyclopedia of DNA elements in the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4436866

Improved models for transcription factor binding site identification using nonindependent interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4436866

Quantitative analysis demonstrates most transcription factors require only simple models of specificity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4436866

Quantitative models of the mechanisms that control genome-wide patterns of transcription factor binding during early Drosophila development

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4436866

Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4436866

JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4436866

Diversity and complexity in DNA recognition by transcription factors

21 June 2018

1 reference

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Biopython: freely available Python tools for computational molecular biology and bioinformatics

21 June 2018

1 reference

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Finding evolutionarily conserved cis-regulatory modules with a universal set of motifs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4436866

bioDBnet: the biological database network

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4436866

Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4436866

Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4436866

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4436866

MatInspector and beyond: promoter analysis based on transcription factor binding sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4436866

Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4436866

MATCH: A tool for searching transcription factor binding sites in DNA sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4436866

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4436866

MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4436866

Information content of binding sites on nucleotide sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4436866

On the power of profiles for transcription factor binding site detection.

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12859-015-0573-5

10.1186/S12859-015-0573-5

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25927199%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcbi/DabrowskiDKKW15

10 June 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25927199%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

PubMed publication ID

25927199

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25927199%20AND%20SRC:MED&resulttype=core&format=json