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MICCA: a complete and accurate software for taxonomic profiling of metagenomic data.
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stated in
Europe PubMed Central
PMC publication ID
4649890
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25988396%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
title
MICCA: a complete and accurate software for taxonomic profiling of metagenomic data
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
4649890
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25988396%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
main subject
software
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metagenomics
1 reference
based on heuristic
inferred from title
author
Carlotta De Filippo
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
4649890
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25988396%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
Davide Albanese
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
4649890
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25988396%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
Duccio Cavalieri
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMC publication ID
4649890
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25988396%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
Claudio Donati
series ordinal
5
1 reference
stated in
Europe PubMed Central
PMC publication ID
4649890
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25988396%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
author name string
Paolo Fontana
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
4649890
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25988396%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
language of work or name
English
0 references
publication date
19 May 2015
1 reference
stated in
Europe PubMed Central
PMC publication ID
4649890
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25988396%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
published in
Scientific Reports
1 reference
stated in
Europe PubMed Central
PMC publication ID
4649890
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25988396%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
volume
5
1 reference
stated in
Europe PubMed Central
PMC publication ID
4649890
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25988396%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
page(s)
9743
1 reference
stated in
Europe PubMed Central
PMC publication ID
4649890
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25988396%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
copyright license
Creative Commons Attribution 4.0 International
start time
19 May 2015
1 reference
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April 2022 Public Data File from Crossref
copyright status
copyrighted
0 references
cites work
Simulating a population genomics data set using FlowSim
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4649890
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21 June 2018
UPARSE: highly accurate OTU sequences from microbial amplicon reads
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21 June 2018
CLUSTOM: a novel method for clustering 16S rRNA next generation sequences by overlap minimization
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21 June 2018
phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data
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21 June 2018
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21 June 2018
A framework for human microbiome research
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21 June 2018
Grinder: a versatile amplicon and shotgun sequence simulator
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21 June 2018
DNACLUST: accurate and efficient clustering of phylogenetic marker genes
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21 June 2018
UCHIME improves sensitivity and speed of chimera detection
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4649890
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21 June 2018
Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation
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21 June 2018
Search and clustering orders of magnitude faster than BLAST
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4649890
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21 June 2018
QIIME allows analysis of high-throughput community sequencing data
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FastTree 2--approximately maximum-likelihood trees for large alignments
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PyNAST: a flexible tool for aligning sequences to a template alignment
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Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
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Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
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MUSCLE: multiple sequence alignment with high accuracy and high throughput
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reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4649890
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21 June 2018
Cutadapt removes adapter sequences from high-throughput sequencing reads
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FSREP09743
retrieved
7 January 2021
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inferred from DOI database lookup
Identifiers
DOI
10.1038/SREP09743
1 reference
stated in
Europe PubMed Central
PMC publication ID
4649890
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25988396%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
Dimensions Publication ID
1050324553
0 references
PMC publication ID
4649890
1 reference
stated in
Europe PubMed Central
PMC publication ID
4649890
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25988396%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
PubMed publication ID
25988396
1 reference
stated in
Europe PubMed Central
PMC publication ID
4649890
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25988396%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
ResearchGate publication ID
276935882
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