(Q34204387)

31 July 2017

title

Grinder: a versatile amplicon and shotgun sequence simulator (English)

1 reference

31 July 2017

1 reference

4

Philip Hugenholtz

0 references

Gene W. Tyson

object named as

Gene W Tyson

series ordinal

5

0 references

Forest Rohwer

series ordinal

3

object named as

Forest Rohwer

1 reference

31 July 2017

Florent E Angly

1

1 reference

31 July 2017

Dana Willner

series ordinal

2

1 reference

31 July 2017

language of work or name

English

0 references

publication date

19 March 2012

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31 July 2017

published in

Nucleic Acids Research

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31 July 2017

volume

40

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31 July 2017

issue

12

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31 July 2017

page(s)

e94

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Creative Commons Attribution-NonCommercial 3.0 Unported

31 July 2017

copyright license

start time

8 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

5 July 2018

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Accurate determination of microbial diversity from 454 pyrosequencing data

5 July 2018

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ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences

5 July 2018

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PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data

5 July 2018

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MetaSim: a sequencing simulator for genomics and metagenomics

5 July 2018

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A renaissance for the pioneering 16S rRNA gene

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384353

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

5 July 2018

1 reference

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Accuracy and quality of massively parallel DNA pyrosequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384353

Use of simulated data sets to evaluate the fidelity of metagenomic processing methods

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384353

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

5 July 2018

1 reference

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The marine viromes of four oceanic regions

5 July 2018

1 reference

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Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384353

Microbial diversity in the deep sea and the underexplored "rare biosphere"

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384353

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384353

Metaproteomic analysis of Chesapeake Bay microbial communities

5 July 2018

1 reference

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Galaxy: a platform for interactive large-scale genome analysis

5 July 2018

1 reference

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Genome sequencing in microfabricated high-density picolitre reactors

5 July 2018

1 reference

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The Bioperl toolkit: Perl modules for the life sciences

5 July 2018

1 reference

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Artificially generated data sets for testing DNA sequence assembly algorithms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384353

Aligning short reads to reference alignments and trees

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384353

Average genome size: a potential source of bias in comparative metagenomics

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384353

Systematic artifacts in metagenomes from complex microbial communities.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384353

Understanding Bias in Microbial Community Analysis Techniques due to rrn Operon Copy Number Heterogeneity

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384353

GenFrag 2.1: new features for more robust fragment assembly benchmarks.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384353

Multiple displacement amplification compromises quantitative analysis of metagenomes

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384353

The frequency of chimeric molecules as a consequence of PCR co-amplification of 16S rRNA genes from different bacterial species

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22434876

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A dataset generator for whole genome shotgun sequencing

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22434876

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKS251

1 reference

31 July 2017

1 reference

31 July 2017

1 reference