(Q30973359)

English

Evaluating the Species Boundaries of Green Microalgae (Coccomyxa, Trebouxiophyceae, Chlorophyta) Using Integrative Taxonomy and DNA Barcoding with Further Implications for the Species Identification in Environmental Samples

scientific article

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

31 October 2017

Evaluating the Species Boundaries of Green Microalgae (Coccomyxa, Trebouxiophyceae, Chlorophyta) Using Integrative Taxonomy and DNA Barcoding with Further Implications for the Species Identification in Environmental Samples (English)

1 reference

Europe PubMed Central

PMC publication ID

31 October 2017

species identification

0 references

1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

object named as

Lydia Gustavs

2

0 references

Thomas Pröschold

5

object named as

Thomas Pröschold

1 reference

Europe PubMed Central

PMC publication ID

31 October 2017

author name string

Tatyana Darienko

1

1 reference

Europe PubMed Central

PMC publication ID

31 October 2017

Anja Eggert

3

1 reference

Europe PubMed Central

PMC publication ID

31 October 2017

Wiebke Wolf

4

1 reference

Europe PubMed Central

PMC publication ID

31 October 2017

language of work or name

0 references

publication date

16 June 2015

1 reference

Europe PubMed Central

PMC publication ID

31 October 2017

1 reference

Europe PubMed Central

PMC publication ID

31 October 2017

10

1 reference

Europe PubMed Central

PMC publication ID

31 October 2017

6

1 reference

Europe PubMed Central

PMC publication ID

31 October 2017

e0127838

1 reference

Europe PubMed Central

PMC publication ID

31 October 2017

copyright license

Creative Commons Attribution 4.0 International

16 June 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

PHOTOSYNTHETIC INORGANIC CARBON ACQUISITION IN AN ACID-TOLERANT, FREE-LIVING SPECIES OF COCCOMYXA (CHLOROPHYTA)(1).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

A general species delimitation method with applications to phylogenetic placements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

Delimiting species using single-locus data and the Generalized Mixed Yule Coalescent approach: a revised method and evaluation on simulated data sets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

Limits of nuclear ribosomal DNA internal transcribed spacer (ITS) sequences as species barcodes for Fungi.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

Comparing COI and ITS as DNA barcode markers for mushrooms and allies (Agaricomycotina).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

A close-up view on ITS2 evolution and speciation - a case study in the Ulvophyceae (Chlorophyta, Viridiplantae).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

ABGD, Automatic Barcode Gap Discovery for primary species delimitation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

Green algae and the origin of land plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

The systematics of Zoochlorella revisited employing an integrative approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

Using population genetic theory and DNA sequences for species detection and identification in asexual organisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

A DNA barcode for land plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

PseudoViewer3: generating planar drawings of large-scale RNA structures with pseudoknots

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

Is there a molecular key to the level of "biological species" in eukaryotes? A DNA guide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

jModelTest: phylogenetic model averaging

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

BEAST: Bayesian evolutionary analysis by sampling trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

Species discovery versus species identification in DNA barcoding efforts: response to Rubinoff

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

Slow algae, fast fungi: exceptionally high nucleotide substitution rate differences between lichenized fungi Omphalina and their symbiotic green algae Coccomyxa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

MrBayes 3: Bayesian phylogenetic inference under mixed models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

RNA-based phylogenetic methods: application to mammalian mitochondrial RNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

ITS2 is a double-edged tool for eukaryote evolutionary comparisons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

Mfold web server for nucleic acid folding and hybridization prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

Biological identifications through DNA barcodes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

An approximately unbiased test of phylogenetic tree selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

CONSEL: for assessing the confidence of phylogenetic tree selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

MRBAYES: Bayesian inference of phylogenetic trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

TreeView: an application to display phylogenetic trees on personal computers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4469705

21 June 2018

Genotype versus phenotype variability in Chlorella and Micractinium (Chlorophyta, Trebouxiophyceae).

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0127838

21 January 2018

ELECTRON-MICROSCOPICAL STUDIES ON THE PHYCOBIONT COCCOMYXA SCHMIDLE

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0127838

21 January 2018

A cryptic intracellular green alga in Ginkgo biloba: ribosomal DNA markers reveal worldwide distribution.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0127838

21 January 2018

Phylogenetic and morphological characterisation of the green algae infesting blue mussel Mytilus edulis in the North and South Atlantic oceans.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0127838

21 January 2018

Phylogenetic and morphological characterization of the green alga infesting the horse mussel Modiolus modiolus from Vityaz Bay (Peter the Great Bay, Sea of Japan).

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0127838

21 January 2018

A new look at the statistical model identification

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0127838

21 January 2018

Bayesian phylogenetics using an RNA substitution model applied to early mammalian evolution.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0127838

21 January 2018

The evolution of tRNA-Leu genes in animal mitochondrial genomes

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0127838

21 January 2018

A comprehensive analysis of mammalian mitochondrial genome base composition and improved phylogenetic methods

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0127838

21 January 2018

Consideration of RNA secondary structure significantly improves likelihood-based estimates of phylogeny: examples from the bilateria.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0127838

21 January 2018

UV-induced effects on growth, photosynthetic performance and sunscreen contents in different populations of the green alga Klebsormidium fluitans (Streptophyta) from alpine soil crusts

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0127838

21 January 2018

A consensus secondary structure of ITS2 in the chlorophyta identified by phylogenetic reconstruction.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0127838

21 January 2018

IDENTIFICATION AND PHYSIOLOGICAL ASPECTS OF A NOVEL CAROTENOID-ENRICHED, METAL-RESISTANT MICROALGA ISOLATED FROM AN ACIDIC RIVER IN HUELVA (SPAIN)(1).

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0127838

21 January 2018

New insights into the biogeochemistry of extremely acidic environments revealed by a combined cultivation-based and culture-independent study of two stratified pit lakes

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0127838

21 January 2018

Host–parasite relationship of the geoduck Panopea abbreviata and the green alga Coccomyxa parasitica in the Argentinean Patagonian coast

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0127838

21 January 2018

Reply to Kiss: Internal transcribed spacer (ITS) remains the best candidate as a universal DNA barcode marker for Fungi despite imperfections

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0127838

21 January 2018

Genetic diversity of green algal and cyanobacterial photobionts in Nephroma (Peltigerales)

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0127838

21 January 2018

Molecular phylogeny and taxonomic revision of Chlamydomonas (Chlorophyta). I. Emendation of Chlamydomonas Ehrenberg and Chloromonas Gobi, and description of Oogamochlamys gen. nov. and Lobochlamys gen. nov

1 reference

https://pubmed.ncbi.nlm.nih.gov/26080086

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PSEUDOCOCCOMYXA ADHAERENS KORSHIKOV--A COCCAL GREEN ALGA ADAPTED TO EXTREME CONDITIONS ESSENTIAL FOR LIFE

1 reference

https://pubmed.ncbi.nlm.nih.gov/26080086

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The significance of a coincidence between evolutionary landmarks found in mating affinity and a DNA sequence

1 reference

https://pubmed.ncbi.nlm.nih.gov/26080086

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0127838

1 reference

Europe PubMed Central

PMC publication ID

31 October 2017

2015PLoSO..1027838D

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

31 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

31 October 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(1 entry)

specieswiki Template:Darienko et al., 2015

Retrieved from "https://www.wikidata.org/w/index.php?title=Q30973359&oldid=1971503044"