(Q30975976)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26098447%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

title

Analysis of intronic and exonic reads in RNA-seq data characterizes transcriptional and post-transcriptional regulation (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26098447%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

0 references

1 reference

1 reference

corrigendum / erratum

Erratum: Analysis of intronic and exonic reads in RNA-seq data characterizes transcriptional and post-transcriptional regulation

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author

Maria Florescu

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26098447%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Michael B Stadler

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26098447%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

author name string

Dimos Gaidatzis

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26098447%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Lukas Burger

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26098447%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

publication date

22 June 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26098447%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26098447%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

volume

33

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26098447%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

issue

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26098447%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

page(s)

722-729

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26098447%20AND%20SRC:MED&resulttype=core&format=json

Regulatory element detection using correlation with expression.

17 February 2020

cites work

1 reference

12 December 2020

A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

1 reference

12 December 2020

Histone modification levels are predictive for gene expression

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12 December 2020

A comparison of methods for differential expression analysis of RNA-seq data

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12 December 2020

Assessment of transcript reconstruction methods for RNA-seq

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12 December 2020

Physical Isolation of Nascent RNA Chains Transcribed by RNA Polymerase II: Evidence for Cotranscriptional Splicing

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12 December 2020

Mammalian microRNAs predominantly act to decrease target mRNA levels

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12 December 2020

DNA-binding factors shape the mouse methylome at distal regulatory regions

1 reference

12 December 2020

Efficient cellular fractionation improves RNA sequencing analysis of mature and nascent transcripts from human tissues

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12 December 2020

Genome-wide determination of RNA stability reveals hundreds of short-lived noncoding transcripts in mammals.

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12 December 2020

A high-resolution map of the three-dimensional chromatin interactome in human cells

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12 December 2020

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

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12 December 2020

Analysis and design of RNA sequencing experiments for identifying isoform regulation

1 reference

12 December 2020

Chromatin measurements reveal contributions of synthesis and decay to steady-state mRNA levels

1 reference

12 December 2020

Cell-type-specific signatures of microRNAs on target mRNA expression

1 reference

12 December 2020

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression

1 reference

12 December 2020

Detection of splice junctions from paired-end RNA-seq data by SpliceMap.

1 reference

12 December 2020

SnapShot-Seq: a method for extracting genome-wide, in vivo mRNA dynamics from a single total RNA sample

1 reference

12 December 2020

A comparison between ribo-minus RNA-sequencing and polyA-selected RNA-sequencing

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12 December 2020

Mapping and quantifying mammalian transcriptomes by RNA-Seq

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12 December 2020

Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

1 reference

12 December 2020

Differential expression analysis for sequence count data

1 reference

12 December 2020

Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs

1 reference

12 December 2020

voom: Precision weights unlock linear model analysis tools for RNA-seq read counts

1 reference

12 December 2020

Transcriptional architecture and chromatin landscape of the core circadian clock in mammals

1 reference

12 December 2020

STAR: ultrafast universal RNA-seq aligner

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12 December 2020

Extensive oscillatory gene expression during C. elegans larval development.

1 reference

12 December 2020

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

1 reference

12 December 2020

Nascent-Seq reveals novel features of mouse circadian transcriptional regulation

1 reference

12 December 2020

Coupled pre-mRNA and mRNA dynamics unveil operational strategies underlying transcriptional responses to stimuli.

1 reference

12 December 2020

Nascent-seq indicates widespread cotranscriptional pre-mRNA splicing in Drosophila

1 reference

12 December 2020

Full-length transcriptome assembly from RNA-Seq data without a reference genome

1 reference

12 December 2020

Precision and functional specificity in mRNA decay

1 reference

12 December 2020

Landscape of transcription in human cells

1 reference

12 December 2020

Widespread transcription at neuronal activity-regulated enhancers

1 reference

12 December 2020

Global analyses of the effect of different cellular contexts on microRNA targeting

1 reference

12 December 2020

Transcript dynamics of proinflammatory genes revealed by sequence analysis of subcellular RNA fractions

1 reference

12 December 2020

Modeling the relative relationship of transcription factor binding and histone modifications to gene expression levels in mouse embryonic stem cells

1 reference

12 December 2020

RNA-SeQC: RNA-seq metrics for quality control and process optimization

1 reference

12 December 2020

Silencing of microRNAs in vivo with 'antagomirs'

1 reference

12 December 2020

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

1 reference

12 December 2020

Differentiation of mouse embryonic stem cells into a defined neuronal lineage

1 reference

12 December 2020

Alternative isoform regulation in human tissue transcriptomes

1 reference

12 December 2020

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

1 reference

12 December 2020

Extensive and divergent circadian gene expression in liver and heart

1 reference

12 December 2020

Modeling gene expression using chromatin features in various cellular contexts

1 reference

12 December 2020

Circadian oscillations of protein-coding and regulatory RNAs in a highly dynamic mammalian liver epigenome

1 reference

12 December 2020

De novo transcriptome assembly with ABySS.

1 reference

12 December 2020

Total RNA sequencing reveals nascent transcription and widespread co-transcriptional splicing in the human brain

1 reference

12 December 2020

Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation

1 reference

12 December 2020

The widespread impact of mammalian MicroRNAs on mRNA repression and evolution

1 reference

12 December 2020

QuasR: quantification and annotation of short reads in R.

1 reference

12 December 2020

Tests for comparing elements of a correlation matrix

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNBT.3269

7 January 2021