(Q34565989)

3 August 2017

Analysis and design of RNA sequencing experiments for identifying isoform regulation (English)

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3 August 2017

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Edoardo M Airoldi

3

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author name string

Yarden Katz

series ordinal

1

1 reference

3 August 2017

Eric T Wang

series ordinal

2

1 reference

3 August 2017

Christopher B Burge

series ordinal

4

1 reference

3 August 2017

7 November 2010

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3 August 2017

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3 August 2017

7

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3 August 2017

1009-1015

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3 August 2017

12

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https://scigraph.springernature.com/pub.10.1038/nmeth.1528

3 August 2017

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cites work

Alternative expression analysis by RNA sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037023

Modeling non-uniformity in short-read rates in RNA-Seq data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037023

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037023

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037023

Molecular mechanisms of eukaryotic pre-mRNA 3' end processing regulation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037023

Splice site strength-dependent activity and genetic buffering by poly-G runs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037023

Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037023

A physical and functional link between splicing factors promotes pre-mRNA 3' end processing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037023

Cancer-associated regulation of alternative splicing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037023

Statistical inferences for isoform expression in RNA-Seq

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037023

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037023

Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037023

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037023

Alternative isoform regulation in human tissue transcriptomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037023

Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037023

Mapping and quantifying mammalian transcriptomes by RNA-Seq

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037023

The M2 splice isoform of pyruvate kinase is important for cancer metabolism and tumour growth

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037023

The hnRNPs F and H2 bind to similar sequences to influence gene expression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037023

Understanding alternative splicing: towards a cellular code

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037023

Heterogeneous nuclear ribonucleoproteins F and H/H' show differential expression in normal and selected cancer tissues

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037023

Analysis of the human neurexin genes: alternative splicing and the generation of protein diversity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037023

The RNA-binding protein CUGBP1 regulates stability of tumor necrosis factor mRNA in muscle cells: implications for myotonic dystrophy

7 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1528

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1528

RNA-Seq gene expression estimation with read mapping uncertainty

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1528

PolyA_DB: a database for mammalian mRNA polyadenylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1528

A statistical method for the detection of alternative splicing using RNA-seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1528

Annotating genomes with massive-scale RNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1528

TopHat: discovering splice junctions with RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1528

Global and unbiased detection of splice junctions from RNA-seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1528

Detection of splice junctions from paired-end RNA-seq data by SpliceMap.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1528

Fast and SNP-tolerant detection of complex variants and splicing in short reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1528

Getting started in probabilistic graphical models

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1528

Identification of alternative splicing markers for breast cancer

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21057496

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Logistic-Normal Distributions: Some Properties and Uses

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1528

inferred from DOI database lookup

7 January 2021

based on heuristic

Out of India, thrice: diversification of Asian forest scorpions reveals three colonizations of Southeast Asia

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1528

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NMETH.1528

1 reference

Dimensions Publication ID

3 August 2017

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1 reference

3 August 2017

1 reference