(Q30983929)

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Identification of Habitat-Specific Biomes of Aquatic Fungal Communities Using a Comprehensive Nearly Full-Length 18S rRNA Dataset Enriched with Contextual Data

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scholarly article

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Europe PubMed Central

PMC publication ID

11 August 2017

Identification of Habitat-Specific Biomes of Aquatic Fungal Communities Using a Comprehensive Nearly Full-Length 18S rRNA Dataset Enriched with Contextual Data (English)

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

fungal community

1 reference

based on heuristic

inferred from title

object named as

Pelin Yilmaz

2

0 references

Frank Oliver Glöckner

10

object named as

Frank Oliver Glöckner

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

author name string

Katrin Panzer

1

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Michael Weiß

3

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Lothar Reich

4

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Michael Richter

5

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Jutta Wiese

6

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Rolf Schmaljohann

7

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Antje Labes

8

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Johannes F Imhoff

9

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Europe PubMed Central

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11 August 2017

Marlis Reich

11

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Europe PubMed Central

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11 August 2017

language of work or name

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publication date

30 July 2015

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Europe PubMed Central

PMC publication ID

11 August 2017

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

10

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Europe PubMed Central

PMC publication ID

11 August 2017

7

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

e0134377

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

copyright license

Creative Commons Attribution 4.0 International

30 July 2015

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April 2022 Public Data File from Crossref

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0 references

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1 reference

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21 January 2018

Identifiers

10.1371/JOURNAL.PONE.0134377

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

2015PLoSO..1034377P

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

ResearchGate publication ID

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