(Q30985881)

16 October 2017

Impact of normalization methods on high-throughput screening data with high hit rates and drug testing with dose-response data (English)

1 reference

high-throughput screening

16 October 2017

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drug screening

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author

Olli-Pekka Kallioniemi

9

1 reference

PubMed publication ID

28 June 2017

6

0 references

Päivi Östling

8

object named as

Päivi Östling

1 reference

16 October 2017

1

John-Patrick Mpindi

1 reference

16 October 2017

Tero Aittokallio

7

0 references

author name string

Potdar Swapnil

2

1 reference

16 October 2017

Bychkov Dmitrii

3

1 reference

16 October 2017

Saarela Jani

4

1 reference

16 October 2017

Khalid Saeed

5

1 reference

16 October 2017

language of work or name

English

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publication date

7 August 2015

1 reference

16 October 2017

1 reference

16 October 2017

31

1 reference

16 October 2017

23

1 reference

16 October 2017

3815-3821

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Creative Commons Attribution-NonCommercial 4.0 International

16 October 2017

start time

2 October 2016

1 reference

April 2023 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Patient-derived models of acquired resistance can identify effective drug combinations for cancer.

1 reference

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Organoid cultures derived from patients with advanced prostate cancer

21 June 2018

1 reference

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Enhancing reproducibility in cancer drug screening: how do we move forward?

21 June 2018

1 reference

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Quantitative scoring of differential drug sensitivity for individually optimized anticancer therapies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4653387

Rank ordering plate data facilitates data visualization and normalization in high-throughput screening

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4653387

Genomics of Drug Sensitivity in Cancer (GDSC): a resource for therapeutic biomarker discovery in cancer cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4653387

Kinase pathway dependence in primary human leukemias determined by rapid inhibitor screening

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4653387

Two effective methods for correcting experimental high-throughput screening data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4653387

The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4653387

Systematic identification of genomic markers of drug sensitivity in cancer cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4653387

Illustration of SSMD, z score, SSMD*, z* score, and t statistic for hit selection in RNAi high-throughput screens

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4653387

Systematic error detection in experimental high-throughput screening

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4653387

NoiseMaker: simulated screens for statistical assessment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4653387

Statistical methods for analysis of high-throughput RNA interference screens

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4653387

RNAither, an automated pipeline for the statistical analysis of high-throughput RNAi screens

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4653387

Using generalized procrustes analysis (GPA) for normalization of cDNA microarray data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4653387

ChemBank: a small-molecule screening and cheminformatics resource database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4653387

A pair of new statistical parameters for quality control in RNA interference high-throughput screening assays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4653387

The NCI60 human tumour cell line anticancer drug screen

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4653387

Analysis of cell-based RNAi screens.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4653387

Statistical practice in high-throughput screening data analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4653387

Improved statistical methods for hit selection in high-throughput screening

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4653387

A Simple Statistical Parameter for Use in Evaluation and Validation of High Throughput Screening Assays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4653387

A concordance correlation coefficient to evaluate reproducibility

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4653387

HitPick: a web server for hit identification and target prediction of chemical screenings

21 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV455

An efficient method for the detection and elimination of systematic error in high-throughput screening

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV455

Control-Plate Regression (CPR) Normalization for High-Throughput Screens with Many Active Features.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV455

Individualized systems medicine strategy to tailor treatments for patients with chemorefractory acute myeloid leukemia.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV455

A modified LOESS normalization applied to microRNA arrays: a comparative evaluation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV455

The use of strictly standardized mean difference for hit selection in primary RNA interference high-throughput screening experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV455

An analysis of variance test for normality (complete samples)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV455

10.1093/BIOINFORMATICS/BTV455

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/MpindiSDJSWAOK15

16 October 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

16 October 2017

PubMed publication ID

26254433

1 reference