(Q31004626)

English

NGS-QCbox and Raspberry for Parallel, Automated and Rapid Quality Control Analysis of Large-Scale Next Generation Sequencing (Illumina) Data

scientific article published on 13 October 2015

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

16 October 2017

NGS-QCbox and Raspberry for Parallel, Automated and Rapid Quality Control Analysis of Large-Scale Next Generation Sequencing (Illumina) Data (English)

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Europe PubMed Central

PMC publication ID

16 October 2017

quality control

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Rajeev Kumar Varshney

object named as

Rajeev K Varshney

5

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object named as

Aamir W Khan

2

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4

object named as

Mahendar Thudi

1 reference

Europe PubMed Central

PMC publication ID

16 October 2017

author name string

Mohan A V S K Katta

1

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Europe PubMed Central

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16 October 2017

Dadakhalandar Doddamani

3

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Europe PubMed Central

PMC publication ID

16 October 2017

language of work or name

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publication date

13 October 2015

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Europe PubMed Central

PMC publication ID

16 October 2017

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Europe PubMed Central

PMC publication ID

16 October 2017

10

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Europe PubMed Central

PMC publication ID

16 October 2017

10

1 reference

Europe PubMed Central

PMC publication ID

16 October 2017

e0139868

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Europe PubMed Central

PMC publication ID

16 October 2017

copyright license

Creative Commons Attribution 4.0 International

13 October 2015

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April 2022 Public Data File from Crossref

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HTSeq--a Python framework to work with high-throughput sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604202

21 June 2018

Automated reconstruction of whole-genome phylogenies from short-sequence reads

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604202

21 June 2018

When whole-genome alignments just won't work: kSNP v2 software for alignment-free SNP discovery and phylogenetics of hundreds of microbial genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604202

21 June 2018

Whole-genome sequencing reveals untapped genetic potential in Africa's indigenous cereal crop sorghum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604202

21 June 2018

Agriculture: Feeding the future

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604202

21 June 2018

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

1 reference

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21 June 2018

Genome-wide genetic changes during modern breeding of maize

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604202

21 June 2018

The iPlant Collaborative: Cyberinfrastructure for Plant Biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604202

21 June 2018

Bpipe: a tool for running and managing bioinformatics pipelines

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604202

21 June 2018

Fast gapped-read alignment with Bowtie 2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604202

21 June 2018

Current state-of-art of sequencing technologies for plant genomics research

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604202

21 June 2018

NGS QC Toolkit: a toolkit for quality control of next generation sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604202

21 June 2018

ART: a next-generation sequencing read simulator.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604202

21 June 2018

Quality control and preprocessing of metagenomic datasets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604202

21 June 2018

BEDTools: a flexible suite of utilities for comparing genomic features

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604202

21 June 2018

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604202

21 June 2018

The Sequence Alignment/Map format and SAMtools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4604202

21 June 2018

Identifiers

10.1371/JOURNAL.PONE.0139868

1 reference

Europe PubMed Central

PMC publication ID

16 October 2017

2015PLoSO..1039868K

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 October 2017

ResearchGate publication ID

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