(Q31007446)

English

Insights on the evolution of metabolic networks of unicellular translationally biased organisms from transcriptomic data and sequence analysis

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

28 June 2017

Insights on the evolution of metabolic networks of unicellular translationally biased organisms from transcriptomic data and sequence analysis (English)

1 reference

Europe PubMed Central

PubMed publication ID

28 June 2017

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metabolic network

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based on heuristic

inferred from title

Alessandra Carbone

object named as

Alessandra Carbone

1

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author name string

Richard Madden

2

1 reference

Europe PubMed Central

PubMed publication ID

28 June 2017

publication date

26 September 2005

1 reference

Europe PubMed Central

PubMed publication ID

28 June 2017

Journal of Molecular Evolution

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Europe PubMed Central

PubMed publication ID

28 June 2017

61

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Europe PubMed Central

PubMed publication ID

28 June 2017

4

1 reference

Europe PubMed Central

PubMed publication ID

28 June 2017

456-469

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Europe PubMed Central

PubMed publication ID

28 June 2017

https://scigraph.springernature.com/pub.10.1007/s00239-004-0317-z

0 references

Correlation between protein and mRNA abundance in yeast

1 reference

https://api.crossref.org/works/10.1007%2FS00239-004-0317-Z

21 January 2018

Absence of translationally selected synonymous codon usage bias in Helicobacter pylori.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-004-0317-Z

21 January 2018

The common aromatic amino acid biosynthesis pathway is essential in Mycobacterium tuberculosis

1 reference

https://api.crossref.org/works/10.1007%2FS00239-004-0317-Z

21 January 2018

Induction of specific enzymes of the oxidative pentose phosphate pathway by glucono-delta-lactone in Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1007%2FS00239-004-0317-Z

21 January 2018

Network identification and flux quantification in the central metabolism of Saccharomyces cerevisiae under different conditions of glucose repression.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA microarray analysis of the hyperthermophilic archaeon Pyrococcus furiosus: evidence for anNew type of sulfur-reducing enzyme complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Enzymes of hydrogen metabolism in Pyrococcus furiosus

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The complete genome sequence of the gastric pathogen Helicobacter pylori

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dissecting the regulatory circuitry of a eukaryotic genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mining Bacillus subtilis chromosome heterogeneities using hidden Markov models

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

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Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Seripauperins of Saccharomyces cerevisiae: a new multigene family encoding serine-poor relatives of serine-rich proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon usage in Caenorhabditis elegans: delineation of translational selection and mutational biases

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Translational selection and yeast proteome evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

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Use and misuse of correspondence analysis in codon usage studies

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

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Saccharomyces bulderi sp. nov., a yeast that ferments gluconolactone

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene expression and molecular evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

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Regulation of gene expression by oxygen in Saccharomyces cerevisiae

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inferring lifestyle from gene expression patterns

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The stringent response of Mycobacterium tuberculosis is required for long-term survival

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The EcoCyc and MetaCyc databases

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Why does Escherichia coli have two primary pathways for synthesis of glutamate?

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Novel pathway for alcoholic fermentation of delta-gluconolactone in the yeast Saccharomyces bulderi

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon adaptation index as a measure of dominating codon bias.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Essential thioredoxin-dependent peroxiredoxin system from Helicobacter pylori: genetic and kinetic characterization

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcription profile of brewery yeast under fermentation conditions

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

L-serine degradation in Escherichia coli K-12: a combination of L-serine, glycine, and leucine used as a source of carbon.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Helicobacter pylori ribBA-mediated riboflavin production is involved in iron acquisition.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon usage in bacteria: correlation with gene expressivity

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Lipid synthesis in mycobacteria: characterization of the biotin carboxyl carrier protein genes from Mycobacterium leprae and M. tuberculosis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon usage patterns in Escherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens; a review of the considerable within-species diversity

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Exploring the metabolic and genetic control of gene expression on a genomic scale

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Positive and negative elements involved in the differential regulation by heme and oxygen of the HEM13 gene (coproporphyrinogen oxidase) in Saccharomyces cerevisiae

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence for horizontal gene transfer in Escherichia coli speciation

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon bias signatures, organization of microorganisms in codon space, and lifestyle

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The genome of the natural genetic engineer Agrobacterium tumefaciens C58

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Purification and characterization of the alanine aminotransferase from the hyperthermophilic Archaeon pyrococcus furiosus and its role in alanine production

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The EcoCyc Database

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genes required for mycobacterial growth defined by high density mutagenesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

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NUTRITIONAL AND REGULATORY ASPECTS OF SERINE METABOLISM IN ESCHERICHIA COLI

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reduced oxidative pentose phosphate pathway flux in recombinant xylose-utilizing Saccharomyces cerevisiae strains improves the ethanol yield from xylose

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Growth and morphological transformations of Helicobacter pylori in broth media

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Highly expressed and alien genes of the Synechocystis genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/16187158

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00239-004-0317-Z

1 reference

Europe PubMed Central

PubMed publication ID

28 June 2017

Dimensions Publication ID

0 references

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

28 June 2017

ResearchGate publication ID

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