(Q31020087)

8 November 2017

Unresolved orthology and peculiar coding sequence properties of lamprey genes: the KCNA gene family as test case (English)

1 reference

8 November 2017

Falk Hildebrand

2

0 references

Shigehiro Kuraku

object named as

Shigehiro Kuraku

series ordinal

3

0 references

Axel Meyer

object named as

Axel Meyer

series ordinal

4

0 references

author name string

Huan Qiu

series ordinal

1

1 reference

PMCID

3141671

8 November 2017

language of work or name

English

0 references

publication date

23 June 2011

1 reference

8 November 2017

1 reference

8 November 2017

12

1 reference

8 November 2017

325

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-325

8 November 2017

0 references

cites work

Codon usage patterns in Nematoda: analysis based on over 25 million codons in thirty-two species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

The origin of bmp16, a novel Bmp2/4 relative, retained in teleost fish genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

Evolution: Mouth to mouth

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

Neurodevelopment genes in lampreys reveal trends for forebrain evolution in craniates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

Insights into cyclostome phylogenomics: pre-2R or post-2R.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

Parallel adaptations to high temperatures in the Archaean eon.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

Origin of the genetic components of the vomeronasal system in the common ancestor of all extant vertebrates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

Neuropeptide Y-family peptides and receptors in the elephant shark, Callorhinchus milii confirm gene duplications before the gnathostome radiation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

Comparison of correspondence analysis methods for synonymous codon usage in bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

Timing of genome duplications relative to the origin of the vertebrates: did cyclostomes diverge before or after?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

The amphioxus genome and the evolution of the chordate karyotype

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

A site- and time-heterogeneous model of amino acid replacement.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

Codon usage in twelve species of Drosophila

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

Phylogenomic analyses of KCNA gene clusters in vertebrates: why do gene clusters stay intact?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

Time scale for cyclostome evolution inferred with a phylogenetic diagnosis of hagfish and lamprey cDNA sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

A Bayesian compound stochastic process for modeling nonstationary and nonhomogeneous sequence evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

Lamprey type II collagen and Sox9 reveal an ancient origin of the vertebrate collagenous skeleton.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

Diversity and Function of Adaptive Immune Receptors in a Jawless Vertebrate

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

Timing and mechanism of ancient vertebrate genome duplications -- the adventure of a hypothesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

ProtTest: selection of best-fit models of protein evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

21 June 2018

GeneWise and Genomewise

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

MrBayes 3: Bayesian phylogenetic inference under mixed models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

CONSEL: for assessing the confidence of phylogenetic tree selection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

Identification of thermophilic species by the amino acid compositions deduced from their genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

Lamprey Dlx genes and early vertebrate evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

Monophyly of Lampreys and Hagfishes Supported by Nuclear DNA–Coded Genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

Physical mapping of potassium channel gene clusters on mouse chromosomes three and six.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

Prediction of complete gene structures in human genomic DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

The 'effective number of codons' used in a gene

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

Hagfish embryology with reference to the evolution of the neural crest.

21 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-325

Protein tyrosine kinase cDNAs from amphioxus, hagfish, and lamprey: isoform duplications around the divergence of cyclostomes and gnathostomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-325

The evolution of biased codon and amino acid usage in nematode genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-325

Online synonymous codon usage analyses with the ade4 and seqinR packages.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-325

Amino acid composition of genomes, lifestyles of organisms, and evolutionary trends: a global picture with correspondence analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-325

cDNA-based gene mapping and GC3 profiling in the soft-shelled turtle suggest a chromosomal size-dependent GC bias shared by sauropsids.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-325

Analysis of lamprey and hagfish genes reveals a complex history of gene duplications during early vertebrate evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-325

Independent Hox-cluster duplications in lampreys

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-325

ADE-4: a multivariate analysis and graphical display software

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-325

Internal correspondence analysis of codon and amino-acid usage in thermophilic bacteria

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141671

Correlations between coding and contiguous non-coding sequences in isochore families from vertebrate genomes

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21699680

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Human coding and noncoding DNA: compositional correlations

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21699680

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Compositional correlations in the chicken genome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21699680

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-12-325

1 reference

PMCID

3141671

Dimensions Publication ID

8 November 2017

0 references

1 reference

8 November 2017

1 reference

PMCID

3141671