(Q31029404)

13 August 2017

HiC-Pro: an optimized and flexible pipeline for Hi-C data processing (English)

1 reference

13 August 2017

1 reference

Nelle Varoquaux

2

0 references

Nicolas Servant

Nicolas Servant

1

0 references

Emmanuel Barillot

Emmanuel Barillot

9

0 references

Jean-Philippe Vert

Jean-Philippe Vert

6

0 references

Edith Heard

7

Edith Heard

1 reference

13 August 2017

5

Chong-Jian Chen

1 reference

13 August 2017

8

Job Dekker

1 reference

13 August 2017

Bryan R Lajoie

3

1 reference

13 August 2017

Eric Viara

4

1 reference

13 August 2017

1 December 2015

1 reference

13 August 2017

1 reference

13 August 2017

16

1 reference

13 August 2017

259

1 reference

describes a project that uses

13 August 2017

ggplot2

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=4665391

ggplot2

2 references

10 June 2022

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

HiCdat: a fast and easy-to-use Hi-C data analysis tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665391

Bipartite structure of the inactive mouse X chromosome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665391

Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665391

Chromosomes. A comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665391

C-ing the Genome: A Compendium of Chromosome Conformation Capture Methods to Study Higher-Order Chromatin Organization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665391

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665391

The Hitchhiker's guide to Hi-C analysis: practical guidelines

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665391

Hi-Corrector: a fast, scalable and memory-efficient package for normalizing large-scale Hi-C data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665391

Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665391

A high-resolution map of the three-dimensional chromatin interactome in human cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665391

HiCNorm: removing biases in Hi-C data via Poisson regression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665391

Iterative correction of Hi-C data reveals hallmarks of chromosome organization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665391

Normalization of a chromosomal contact map.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665391

HiTC: exploration of high-throughput 'C' experiments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665391

Spatial partitioning of the regulatory landscape of the X-inactivation centre

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665391

Topological domains in mammalian genomes identified by analysis of chromatin interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665391

Fast gapped-read alignment with Bowtie 2

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665391

A decade of 3C technologies: insights into nuclear organization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665391

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665391

BEDTools: a flexible suite of utilities for comparing genomic features

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665391

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4665391

Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes.

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS13059-015-0831-X

Hi-Cpipe: a pipeline for high-throughput chromosome capture

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS13059-015-0831-X

Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS13059-015-0831-X

10.1186/S13059-015-0831-X

21 January 2018

Identifiers

DOI

1 reference

Dimensions Publication ID

13 August 2017

0 references

1 reference

13 August 2017

PubMed publication ID

26619908

1 reference