(Q31038800)

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Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: effects of genetic and environmental alterations in energy metabolism in the leaf

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scholarly article

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Europe PubMed Central

28 June 2017

Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: effects of genetic and environmental alterations in energy metabolism in the leaf (English)

1 reference

Europe PubMed Central

28 June 2017

1 reference

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object named as

Björn Usadel

2

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Magdalena Pawełkowicz

object named as

Magdalena Kowalczyk

8

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Adriano Nunes Nesi

4

object named as

Adriano Nunes-Nesi

1 reference

Europe PubMed Central

28 June 2017

Alisdair R Fernie

13

object named as

Alisdair R Fernie

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Europe PubMed Central

28 June 2017

12

object named as

Mark Stitt

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Europe PubMed Central

28 June 2017

Ewa Urbanczyk-Wochniak

1

object named as

Ewa Urbanczyk-Wochniak

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Europe PubMed Central

28 June 2017

Fernando Carrari

5

object named as

Fernando Carrari

1 reference

Europe PubMed Central

28 June 2017

Oliver E Bläsing

7

object named as

Oliver Bläsing

1 reference

Europe PubMed Central

28 June 2017

author name string

Oliver Thimm

3

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Europe PubMed Central

28 June 2017

Marcus Davy

6

1 reference

Europe PubMed Central

28 June 2017

Daniel Weicht

9

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Europe PubMed Central

28 June 2017

Anna Polinceusz

10

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Europe PubMed Central

28 June 2017

Svenja Meyer

11

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Europe PubMed Central

28 June 2017

publication date

1 March 2006

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Europe PubMed Central

28 June 2017

number of pages

20

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Plant Molecular Biology

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28 June 2017

60

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28 June 2017

773-792

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Europe PubMed Central

28 June 2017

5

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Europe PubMed Central

28 June 2017

https://scigraph.springernature.com/pub.10.1007/s11103-005-5772-4

0 references

Comprehensive transcript profiling of Pto- and Prf-mediated host defense responses to infection by Pseudomonas syringae pv. tomato.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

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Enhanced photosynthetic performance and growth as a consequence of decreasing mitochondrial malate dehydrogenase activity in transgenic tomato plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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Utilization of tomato microarrays for comparative gene expression analysis in the Solanaceae

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

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Reduced expression of aconitase results in an enhanced rate of photosynthesis and marked shifts in carbon partitioning in illuminated leaves of wild species tomato

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

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A novel algorithm for computational identification of contaminated EST libraries

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

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Deductions about the number, organization, and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencing

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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High density molecular linkage maps of the tomato and potato genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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Ethylene-regulated gene expression in tomato fruit: characterization of novel ethylene-responsive and ripening-related genes isolated by differential display

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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Molecular and biochemical triggers of potato tuber development

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

InterPro, progress and status in 2005

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The tomato ethylene receptors NR and LeETR4 are negative regulators of ethylene response and exhibit functional compensation within a multigene family

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High-resolution metabolic phenotyping of genetically and environmentally diverse potato tuber systems. Identification of phenocopies

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparison of changes in fruit gene expression in tomato introgression lines provides evidence of genome-wide transcriptional changes and reveals links to mapped QTLs and described traits

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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Arabidopsis polyamine biosynthesis: absence of ornithine decarboxylase and the mechanism of arginine decarboxylase activity

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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Molecular genetics of tomato fruit ripening

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comprehensive EST analysis of tomato and comparative genomics of fruit ripening

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Terpenoid metabolism in wild-type and transgenic Arabidopsis plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Control of potato tuber sprouting

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bioconductor: open software development for computational biology and bioinformatics

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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Changes in transcriptional profiles are associated with early fruit tissue specialization in tomato

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Respiratory metabolism: glycolysis, the TCA cycle and mitochondrial electron transport

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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Metabolic profiling of transgenic tomato plants overexpressing hexokinase reveals that the influence of hexose phosphorylation diminishes during fruit development.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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The ascorbic acid redox state controls guard cell signaling and stomatal movement

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Control of ascorbate synthesis by respiration and its implications for stress responses

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Metabolic profiling of leaves and fruit of wild species tomato: a survey of the Solanum lycopersicum complex.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Tomato Sequencing Project, the first cornerstone of the International Solanaceae Project (SOL).

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

TM4: a free, open-source system for microarray data management and analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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Pyruvate decarboxylase provides growing pollen tubes with a competitive advantage in petunia

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Basic local alignment search tool

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of malodorous, a wild species allele affecting tomato aroma that was aelected against during domestication

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ascorbate biosynthesis and function in photoprotection

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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An introgression line population of Lycopersicon pennellii in the cultivated tomato enables the identification and fine mapping of yield-associated QTL.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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Inparanoid: a comprehensive database of eukaryotic orthologs

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Parallel analysis of transcript and metabolic profiles: a new approach in systems biology

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Microarray results: how accurate are they?

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An ethylene-inducible component of signal transduction encoded by never-ripe.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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From measurements of metabolites to metabolomics: an 'on the fly' perspective illustrated by recent studies of carbon-nitrogen interactions

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Profiling of diurnal patterns of metabolite and transcript abundance in potato (Solanum tuberosum) leaves

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Plant protein annotation in the UniProt knowledgebase

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Zooming in on a quantitative trait for tomato yield using interspecific introgressions

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effects of leaf ascorbate content on defense and photosynthesis gene expression in Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

GoMiner: a resource for biological interpretation of genomic and proteomic data

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

GMD@CSB.DB: the Golm Metabolome Database

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ESTs, cDNA microarrays, and gene expression profiling: tools for dissecting plant physiology and development

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene ontology: tool for the unification of biology

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

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Characterisation of a pine MYB that regulates lignification.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Thylakoid-bound ascorbate peroxidase mutant exhibits impaired electron transport and photosynthetic activity

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

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based on heuristic

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Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The phytotoxin coronatine and methyl jasmonate impact multiple phytohormone pathways in tomato

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The SOL Genomics Network: a comparative resource for Solanaceae biology and beyond

1 reference

https://pubmed.ncbi.nlm.nih.gov/16649112

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S11103-005-5772-4

1 reference

Europe PubMed Central

28 June 2017

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1 reference

Europe PubMed Central

28 June 2017

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